pACYC_synB_polyST_cstII_lgtB vector (V009584)

LOCUS       40924_4001        8937 bp DNA     circular SYN 17-DEC-2018
DEFINITION  Expression vector pACYC_synB_polyST_cstII_lgtB, complete sequence.
ACCESSION   .
VERSION     .
KEYWORDS    .
SOURCE      synthetic DNA construct
  ORGANISM  synthetic DNA construct
REFERENCE   1  (bases 1 to 8937)
  AUTHORS   Keys TG, Wetter M, Hang I, Rutschmann C, Russo S, Mally M, Steffen 
            M, Zuppiger M, Muller F, Schneider J, Faridmoayer A, Lin CW, Aebi M.
  TITLE     A biosynthetic route for polysialylating proteins in Escherichia 
            coli
  JOURNAL   Metab. Eng. (2017) In press
  PUBMED    29101090
REFERENCE   2  (bases 1 to 8937)
  AUTHORS   Keys TG.
  TITLE     Direct Submission
  JOURNAL   Submitted (21-NOV-2016) Institute of Microbiology, ETH Zurich, 
            Vladimir-Prelog-Weg 4, Zurich, ZH 8093, Switzerland
REFERENCE   3  (bases 1 to 8937)
  TITLE     Direct Submission
REFERENCE   4  (bases 1 to 8937)
  AUTHORS   .
  TITLE     Direct Submission
COMMENT     SGRef: number: 1; type: "Journal Article"; journalName: "Metab. Eng.
            (2017) In press"
COMMENT     SGRef: number: 2; type: "Journal Article"; journalName: "Submitted 
            (21-NOV-2016) Institute of Microbiology, ETH Zurich, 
            Vladimir-Prelog-Weg 4, Zurich, ZH 8093, Switzerland"
COMMENT     SGRef: number: 3; type: "Journal Article"
COMMENT     ##Assembly-Data-START##
            Sequencing Technology :: Sanger dideoxy sequencing 
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..8937
                     /mol_type="other DNA"
                     /organism="synthetic DNA construct"
     terminator      28..75
                     /label=T7 terminator
                     /note="transcription terminator for bacteriophage T7 RNA 
                     polymerase"
     CDS             complement(298..954)
                     /label=CmR
                     /note="chloramphenicol acetyltransferase"
     promoter        complement(955..1057)
                     /label=cat promoter
                     /note="promoter of the E. coli cat gene encoding
                     chloramphenicol acetyltransferase"
     rep_origin      complement(1583..2127)
                     /direction=LEFT
                     /label=p15A ori
                     /note="Plasmids containing the medium-copy-number p15A
                     origin of replication can be propagated in E. coli cells 
                     that contain a second plasmid with the ColE1 origin."
     protein_bind    complement(2318..2339)
                     /label=CAP binding site
                     /note="CAP binding activates transcription in the presence
                     of cAMP."
     CDS             complement(2355..3434)
                     /label=lacI
                     /note="lac repressor"
     promoter        complement(3435..3512)
                     /label=lacI promoter
     promoter        3550..3580
                     /label=lac UV5 promoter
                     /note="E. coli lac promoter with an 'up' mutation"
     protein_bind    3584..3608
                     /label=lac operator
                     /note="The lac repressor binds to the lac operator to
                     inhibit transcription in E. coli. This inhibition can be 
                     relieved by adding lactose or 
                     isopropyl-beta-D-thiogalactopyranoside (IPTG)."
     CDS             3656..4342
                     /codon_start=1
                     /product="SynB"
                     /label=SynB
                     /protein_id="ATN32188.1"
                     /translation="MEKQNIAVILARQNSKGLPLKNLRKMNGISLLGHTINAAISSKCF
                     DRIIVSTDGGLIAEEAKNFGVEVVLRPAELASDTASSISGVIHALETIGSNSGTVTLLQ
                     PTSPLRTGAHIREAFSLFDEKIKGSVVSACPMEHHPLKTLLQINNGEYAPMRHLSDLEQ
                     PRQQLPQAFRPNGAIYINDTASLIANNCFFIAPTKLYIMSHQDSIDIDTELDLQQAENI
                     LNHKES"
     promoter        4357..4387
                     /label=lac UV5 promoter
                     /note="E. coli lac promoter with an ""up"" mutation"
     regulatory      4357..4362
                     /regulatory_class="minus_35_signal"
     regulatory      4381..4387
                     /note="-10 seq (TATAAT; Pribnow box)"
                     /regulatory_class="minus_10_signal"
     protein_bind    4391..4415
                     /label=lac operator
                     /bound_moiety="lac repressor encoded by lacI"
                     /note="The lac repressor binds to the lac operator to
                     inhibit transcription in E. coli. This inhibition can be 
                     relieved by adding lactose or 
                     isopropyl-beta-D-thiogalactopyranoside (IPTG)."
     misc_feature    4393..4413
                     /label=lac operator
                     /note="lac operator"
     CDS             4463..5884
                     /codon_start=1
                     /product="polyST F116-F460T"
                     /label=polyST F116-F460T
                     /protein_id="ATN32189.1"
                     /translation="MGSPSYLSPPRNNLFVISNLGQLNQVQSLIKIQKLTDNLLVILYT
                     SQNLKMPKLVHQSANKNLFESIYLFELPRSPNIITPKKLLYIYHSYKKILNIIQPAHLY
                     MLSFTGHYSYLISIAKKKNITTHLIDEGTGTYAPLLESFSYHPTKLERYLIGNNLNIKG
                     YIDHFDILHVPFPEYAKKIFNAKKYNRFFAHAGGISVNNNIANLQKKYQISKNDYIFVS
                     QRYPISDDLYYKSIVEILNSISLQIKGKIFIKLHPKEMGNNYVMSLFLNMVEINPRLVV
                     INEPPFLIEPLIYLTNPKGIIGLASSSLIYTPLLSPSTQCLSIGELIINLIQKYSMVEN
                     TEMIQVHLEIIKKFNFVNILNDLNGVNSTPLYKTEETFETLLKSAEFAYISKNYFQAIF
                     YWQLASKNNITLLGHKALWYYNALYNVKQIYKMEYSDITYIDNISVDFHSKDKLTWEKI
                     KHYYYSADNRIGRDR"
     promoter        5896..5926
                     /label=lac UV5 promoter
                     /note="E. coli lac promoter with an ""up"" mutation"
     regulatory      5896..5901
                     /regulatory_class="minus_35_signal"
     regulatory      5920..5926
                     /note="-10 seq (TATAAT; Pribnow box)"
                     /regulatory_class="minus_10_signal"
     protein_bind    5930..5954
                     /label=lac operator
                     /bound_moiety="lac repressor encoded by lacI"
                     /note="The lac repressor binds to the lac operator to
                     inhibit transcription in E. coli. This inhibition can be 
                     relieved by adding lactose or 
                     isopropyl-beta-D-thiogalactopyranoside (IPTG)."
     misc_feature    5932..5952
                     /label=lac operator
                     /note="lac operator"
     CDS             6002..6781
                     /codon_start=1
                     /product="CstII"
                     /label=CstII
                     /note="delta-C32 and I53S mutation"
                     /protein_id="ATN32190.1"
                     /translation="MKKVIIAGNGPSLKEIDYSRLPNDFDVFRCNQFYFEDKYYLGKKC
                     KAVFYNPSLFFEQYYTLKHLIQNQEYETELIMCSNYNQAHLENENFVKTFYDYFPDAHL
                     GYDFFKQLKDFNAYFKFHEIYFNQRITSGVYMCAVAIALGYKEIYLSGIDFYQNGSSYA
                     FDTKQKNLLKLAPNFKNDNSHYIGHSKNTDIKALEFLEKTYKIKLYCLCPNSLLANFIG
                     LAPNLNSNFIIQEKNNYTKDILIPSSEAYGKFSKNIN"
     promoter        6793..6823
                     /label=lac UV5 promoter
                     /note="E. coli lac promoter with an ""up"" mutation"
     regulatory      6793..6798
                     /regulatory_class="minus_35_signal"
     regulatory      6817..6823
                     /note="-10 seq (TATAAT; Pribnow box)"
                     /regulatory_class="minus_10_signal"
     protein_bind    6827..6851
                     /label=lac operator
                     /bound_moiety="lac repressor encoded by lacI"
                     /note="The lac repressor binds to the lac operator to
                     inhibit transcription in E. coli. This inhibition can be 
                     relieved by adding lactose or 
                     isopropyl-beta-D-thiogalactopyranoside (IPTG)."
     misc_feature    6829..6849
                     /label=lac operator
                     /note="lac operator"
     CDS             6899..7729
                     /codon_start=1
                     /product="LgtB"
                     /label=LgtB
                     /protein_id="ATN32191.1"
                     /translation="MSQNHVISLASAAERRAHIADTFGRHGIPFQFFDALMPSERLEQA
                     MAELVPGLSAHPYLSGVEKACFMSHAVLWKQALDEGLPYITVFEDDVLLGEGAEKFLAE
                     DAWLQERFDPDTAFIVRLETMFMHVLTSPSGVADYCGRAFPLLESEHWGTAGYIISRKA
                     MRFFLDRFAALPPEGLHPVDLMMFSDFFDREGMPVCQLNPALCAQELHYAKFHDQNSAL
                     GSLIEHDRLLNRKQQRRDSPANTFKHRLIRALTKISREREKRRQRREQFIVPFQ"