Basic Vector Information
- Vector Name:
- pLV3-U6-MCS-shRNA-Blast
- Antibiotic Resistance:
- Ampicillin
- Length:
- 6805 bp
- Type:
- RNA interference
- Replication origin:
- ori
- Host:
- Mammalian cells, Lentivirus
- Selection Marker:
- Blast
- Promoter:
- hPGK
- 5' Primer:
- U6-F：GAGGGCCTATTTCCCATGA
- Growth Temperature:
- 37℃
pLV3-U6-MCS-shRNA-Blast vector Vector Map
Plasmid Resuspension Protocol:
1. Centrifuge at 5,000×g for 5 min.
2. Carefully open the tube and add 20 μl of sterile water to dissolve the DNA.
3. Close the tube and incubate for 10 minutes at room temperature.
4. Briefly vortex the tube and then do a quick spin to concentrate the liquid at the bottom. Speed is less than 5000×g.
5.Store the plasmid at -20 ℃.
pLV3-U6-MCS-shRNA-Blast vector Sequence
LOCUS 62056_15680 6805 bp DNA circular SYN 01-JAN-1980
DEFINITION synthetic circular DNA.
ACCESSION .
VERSION .
KEYWORDS .
SOURCE synthetic DNA construct
ORGANISM synthetic DNA construct
REFERENCE 1 (bases 1 to 6805)
AUTHORS .
TITLE Direct Submission
FEATURES Location/Qualifiers
source 1..6805
/mol_type="other DNA"
/organism="synthetic DNA construct"
promoter 7..507
/label=hPGK promoter
/note="human phosphoglycerate kinase 1 promoter"
CDS 535..930
/label=BSD
/note="blasticidin S deaminase"
LTR 1011..1244
/label=3' LTR (Delta-U3)
/note="self-inactivating 3' long terminal repeat (LTR) from
HIV-1"
polyA_signal 1316..1450
/label=SV40 poly(A) signal
/note="SV40 polyadenylation signal"
rep_origin 1477..1612
/label=SV40 ori
/note="SV40 origin of replication"
promoter complement(1633..1651)
/label=T7 promoter
/note="promoter for bacteriophage T7 RNA polymerase"
primer_bind complement(1661..1677)
/label=M13 fwd
/note="common sequencing primer, one of multiple similar
variants"
rep_origin 1819..2274
/label=f1 ori
/note="f1 bacteriophage origin of replication; arrow
indicates direction of (+) strand synthesis"
promoter 2300..2404
/label=AmpR promoter
CDS 2405..3262
/label=AmpR
/note="beta-lactamase"
rep_origin 3436..4024
/label=ori
/note="high-copy-number ColE1/pMB1/pBR322/pUC origin of
replication"
protein_bind 4312..4333
/label=CAP binding site
/note="CAP binding activates transcription in the presence
of cAMP."
promoter 4348..4378
/label=lac promoter
/note="promoter for the E. coli lac operon"
protein_bind 4386..4402
/label=lac operator
/note="The lac repressor binds to the lac operator to
inhibit transcription in E. coli. This inhibition can be
relieved by adding lactose or
isopropyl-beta-D-thiogalactopyranoside (IPTG)."
primer_bind 4410..4426
/label=M13 rev
/note="common sequencing primer, one of multiple similar
variants"
promoter 4447..4465
/label=T3 promoter
/note="promoter for bacteriophage T3 RNA polymerase"
promoter 4493..4719
/label=RSV promoter
/note="Rous sarcoma virus enhancer/promoter"
LTR 4720..4900
/label=5' LTR (truncated)
/note="truncated 5' long terminal repeat (LTR) from HIV-1"
misc_feature 4947..5072
/label=HIV-1 Psi
/note="packaging signal of human immunodeficiency virus
type 1"
misc_feature 5565..5798
/label=RRE
/note="The Rev response element (RRE) of HIV-1 allows for
Rev-dependent mRNA export from the nucleus to the
cytoplasm."
CDS 5983..6027
/label=gp41 peptide
/note="antigenic peptide corresponding to amino acids 655
to 669 of the HIV envelope protein gp41 (Lutje Hulsik et
al., 2013)"
CDS 6176..6217
/note="Protein Tat from Human immunodeficiency virus type 1
group M subtype B (isolate WMJ22). Accession#: P12509"
promoter 6325..6565
/label=U6 promoter
/note="RNA polymerase III promoter for human U6 snRNA"
misc_feature 6636..6753
/label=cPPT/CTS
/note="central polypurine tract and central termination
sequence of HIV-1"
promoter 6802..6805
/label=hPGK promoter
/note="human phosphoglycerate kinase 1 promoter"
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