LOCUS V033766 13356 bp DNA circular SYN 01-JAN-1980
DEFINITION synthetic circular DNA.
ACCESSION V033766
VERSION V033766
KEYWORDS .
SOURCE .
ORGANISM .
.
FEATURES Location/Qualifiers
misc_feature 25..142
/note="central polypurine tract and central termination
sequence of HIV-1"
/label="cPPT/CTS"
protein_bind 210..228
/bound_moiety="tetracycline repressor TetR"
/gene="tetO"
/note="bacterial operator O2 for the tetR and tetA genes"
/label="tet operator"
protein_bind 245..263
/bound_moiety="tetracycline repressor TetR"
/gene="tetO"
/note="bacterial operator O2 for the tetR and tetA genes"
/label="tet operator"
protein_bind 281..299
/bound_moiety="tetracycline repressor TetR"
/gene="tetO"
/note="bacterial operator O2 for the tetR and tetA genes"
/label="tet operator"
protein_bind 317..335
/bound_moiety="tetracycline repressor TetR"
/gene="tetO"
/note="bacterial operator O2 for the tetR and tetA genes"
/label="tet operator"
protein_bind 352..370
/bound_moiety="tetracycline repressor TetR"
/gene="tetO"
/note="bacterial operator O2 for the tetR and tetA genes"
/label="tet operator"
protein_bind 388..406
/bound_moiety="tetracycline repressor TetR"
/gene="tetO"
/note="bacterial operator O2 for the tetR and tetA genes"
/label="tet operator"
promoter 418..456
/note="human cytomegalovirus (CMV) immediate early
promoter"
/label="minimal CMV promoter"
promoter 524..542
/note="promoter for bacteriophage T7 RNA polymerase"
/label="T7 promoter"
CDS 614..2812
/label="UNKL(NM_001372107)"
/note="UNKL(NM_001372107)"
/gene="UNKL"
CDS 2813..2839
/codon_start=1
/product="HA (human influenza hemagglutinin) epitope tag"
/transl_table=1
/translation="YPYDVPDYA"
/label="HA"
CDS 2885..3226
/codon_start=1
/product="GFP-binding fragment of a single-chain camelid
antibody (Rothbauer et al., 2008)"
/transl_table=1
/translation="VQLVESGGALVQPGGSLRLSCAASGFPVNRYSMRWYRQAPGKERE
WVAGMSSAGDRSSYEDSVKGRFTISRDDARNTVYLQMNSLKPEDTAVYYCNVNVGFEYW
GQGTQVTVSS"
/label="GFP nanobody"
promoter 3352..3851
/note="mouse phosphoglycerate kinase 1 promoter"
/label="PGK promoter"
CDS 3872..4579
/codon_start=1
/note="mammalian codon-optimized"
/product="monomeric derivative of DsRed fluorescent protein
(Shaner et al., 2004)"
/transl_table=1
/translation="MVSKGEEDNMAIIKEFMRFKVHMEGSVNGHEFEIEGEGEGRPYEG
TQTAKLKVTKGGPLPFAWDILSPQFMYGSKAYVKHPADIPDYLKLSFPEGFKWERVMNF
EDGGVVTVTQDSSLQDGEFIYKVKLRGTNFPSDGPVMQKKTMGWEASSERMYPEDGALK
GEIKQRLKLKDGGHYDAEVKTTYKAKKPVQLPGAYNVNIKLDITSHNEDYTIVEQYERA
EGRHSTGGMDELYK"
/label="mCherry"
CDS 4580..4636
/codon_start=1
/note="Eukaryotic ribosomes fail to insert a peptide bond
between the Gly and Pro residues, yielding separate
polypeptides."
/product="2A peptide from porcine teschovirus-1
polyprotein"
/transl_table=1
/translation="ATNFSLLKQAGDVEENPGP"
/label="P2A"
CDS 4637..5236
/codon_start=1
/gene="pac from Streptomyces alboniger"
/note="confers resistance to puromycin"
/product="puromycin N-acetyltransferase"
/transl_table=1
/translation="MTEYKPTVRLATRDDVPRAVRTLAAAFADYPATRHTVDPDRHIER
VTELQELFLTRVGLDIGKVWVADDGAAVAVWTTPESVEAGAVFAEIGPRMAELSGSRLA
AQQQMEGLLAPHRPKEPAWFLATVGVSPDHQGKGLGSAVVLPGVEAAERAGVPAFLETS
APRNLPFYERLGFTVTADVEVPEGPRTWCMTRKPGA*"
/label="PuroR"
misc_feature 5247..5835
/note="woodchuck hepatitis virus posttranscriptional
regulatory element"
/label="WPRE"
LTR 5898..6131
/note="self-inactivating 3' long terminal repeat (LTR)
from HIV-1"
/label="3' LTR (ΔU3)"
promoter complement(6156..6174)
/note="promoter for bacteriophage SP6 RNA polymerase"
/label="SP6 promoter"
promoter 6963..7067
/gene="bla"
/label="AmpR promoter"
CDS 7068..7928
/codon_start=1
/gene="bla"
/note="confers resistance to ampicillin, carbenicillin, and
related antibiotics"
/product="β-lactamase"
/transl_table=1
/translation="MSIQHFRVALIPFFAAFCLPVFA,HPETLVKVKDAEDQLGARVGY
IELDLNSGKILESFRPEERFPMMSTFKVLLCGAVLSRIDAGQEQLGRRIHYSQNDLVEY
SPVTEKHLTDGMTVRELCSAAITMSDNTAANLLLTTIGGPKELTAFLHNMGDHVTRLDR
WEPELNEAIPNDERDTTMPVAMATTLRKLLTGELLTLASRQQLIDWMEADKVAGPLLRS
ALPAGWFIADKSGAGERGSRGIIAALGPDGKPSRIVVIYTTGSQATMDERNRQIAEIGA
SLIKHW*"
/label="AmpR"
rep_origin 8099..8687
/direction=RIGHT
/note="high-copy-number ColE1/pMB1/pBR322/pUC origin of
replication"
/label="ori"
promoter 8933..9262
/note="SV40 enhancer and early promoter"
/label="SV40 promoter"
intron 10396..10461
/note="SV40 (simian virus 40) small t antigen intron"
/label="small t intron"
CDS 10591..10611
/codon_start=1
/locus_tag=""
/note=""
/product="nuclear localization signal of SV40 (simian virus
40) large T antigen"
/protein_id=""
/transl_table=1
/translation="PKKKRKV"
/label="SV40 NLS"
polyA_signal 11036..11170
/note="SV40 polyadenylation signal"
/label="SV40 poly(A) signal"
LTR 11339..11972
/note="3' long terminal repeat (LTR) from HIV-1"
/label="3' LTR"
misc_feature 12019..12144
/note="packaging signal of human immunodeficiency virus
type 1"
/label="HIV-1 Ψ"
misc_feature 12636..12869
/note="The Rev response element (RRE) of HIV-1 allows for
Rev-dependent mRNA export from the nucleus to the
cytoplasm."
/label="RRE"
CDS 13054..13098
/codon_start=1
/note="recognized by the 2H10 single-chain llama nanobody"
/product="antigenic peptide corresponding to amino acids
655 to 669 of the HIV envelope protein gp41 (Lutje Hulsik
et al., 2013)"
/transl_table=1
/translation="KNEQELLELDKWASL"
/label="gp41 peptide"