LOCUS V030613 7211 bp DNA circular SYN 01-JAN-1980
DEFINITION synthetic circular DNA.
ACCESSION V030613
VERSION V030613
KEYWORDS .
SOURCE .
ORGANISM .
.
FEATURES Location/Qualifiers
misc_signal 190..340
/note="packaging signal for adenovirus serotype 5"
/label="Ad5 Ψ"
promoter 469..992
/label="mCMV promoter"
CDS 999..1715
/codon_start=1
/note="mammalian codon-optimized"
/product="the original enhanced GFP (Yang et al., 1996)"
/transl_table=1
/translation="M,V,SKGEELFTGVVPILVELDGDVNGHKFSVSGEGEGDATYGKL
TLKFICTTGKLPVPWPTLVTTLTYGVQCFSRYPDHMKQHDFFKSAMPEGYVQERTIFFK
DDGNYKTRAEVKFEGDTLVNRIELKGIDFKEDGNILGHKLEYNYNSHNVYIMADKQKNG
IKVNFKIRHNIEDGSVQLADHYQQNTPIGDGPVLLPDNHYLSTQSALSKDPNEKRDHMV
LLEFVTAAGITLGMDELYK"
/label="EGFP"
polyA_signal 1862..1983
/note="SV40 polyadenylation signal"
/label="SV40 poly(A) signal"
enhancer 1991..2370
/note="human cytomegalovirus immediate early enhancer"
/label="CMV enhancer"
promoter 2371..2574
/note="human cytomegalovirus (CMV) immediate early
promoter"
/label="CMV promoter"
promoter 2619..2637
/note="promoter for bacteriophage T7 RNA polymerase"
/label="T7 promoter"
CDS 2661..4010
/label="BECN1(NM_003766)"
/note="BECN1(NM_003766)"
/gene="BECN1"
polyA_signal 4096..4320
/note="bovine growth hormone polyadenylation signal"
/label="bGH poly(A) signal"
polyA_signal 4334..4468
/note="SV40 polyadenylation signal"
/label="SV40 poly(A) signal"
protein_bind complement(4488..4521)
/bound_moiety="Cre recombinase"
/note="Cre-mediated recombination occurs in the 8-bp core
sequence (ATGTATGC) (Shaw et al., 2021)."
/label="loxP"
primer_bind complement(4543..4559)
/note="common sequencing primer, one of multiple similar
variants"
/label="M13 rev"
protein_bind 4567..4583
/bound_moiety="lac repressor encoded by lacI"
/note="The lac repressor binds to the lac operator to
inhibit transcription in E. coli. This inhibition can be
relieved by adding lactose or
isopropyl-β-D-thiogalactopyranoside (IPTG)."
/label="lac operator"
promoter complement(4591..4621)
/note="promoter for the E. coli lac operon"
/label="lac promoter"
protein_bind 4636..4657
/bound_moiety="E. coli catabolite activator protein"
/note="CAP binding activates transcription in the presence
of cAMP."
/label="CAP binding site"
rep_origin complement(4945..5533)
/direction=LEFT
/note="high-copy-number ColE1/pMB1/pBR322/pUC origin of
replication"
/label="ori"
CDS complement(5704..6564)
/codon_start=1
/gene="bla"
/note="confers resistance to ampicillin, carbenicillin, and
related antibiotics"
/product="β-lactamase"
/transl_table=1
/translation="MSIQHFRVALIPFFAAFCLPVFA,HPETLVKVKDAEDQLGARVGY
IELDLNSGKILESFRPEERFPMMSTFKVLLCGAVLSRVDAGQEQLGRRIHYSQNDLVEY
SPVTEKHLTDGMTVRELCSAAITMSDNTAANLLLTTIGGPKELTAFLHNMGDHVTRLDR
WEPELNEAIPNDERDTTMPVAMATTLRKLLTGELLTLASRQQLIDWMEADKVAGPLLRS
ALPAGWFIADKSGAGERGSRGIIAALGPDGKPSRIVVIYTTGSQATMDERNRQIAEIGA
SLIKHW*"
/label="AmpR"
promoter complement(6565..6669)
/gene="bla"
/label="AmpR promoter"