Basic Vector Information
- Vector Name:
- pSolycp00012
- Antibiotic Resistance:
- Kanamycin
- Length:
- 11812 bp
- Type:
- Cloning vector
- Replication origin:
- ori
- Host:
- Plants
- Source/Author:
- Aoki K, Kurabayashi A, Suda K, Odahara M, Goto DB, SHibata D.
- Promoter:
- CaMV 35S (enhanced)
pSolycp00012 vector Map
pSolycp00012 vector Sequence
LOCUS 40924_40852 11812 bp DNA circular SYN 18-DEC-2018
DEFINITION Cloning vector pSolycp00012 DNA, complete sequence.
ACCESSION .
VERSION .
KEYWORDS .
SOURCE synthetic DNA construct
ORGANISM synthetic DNA construct
REFERENCE 1 (bases 1 to 11812)
AUTHORS Aoki K, Kurabayashi A, Suda K, Odahara M, Goto DB, SHibata D.
TITLE 5'-flanking region of Solyc06g076630 fused to SlHTA6-EYFP
JOURNAL Unpublished
REFERENCE 2 (bases 1 to 11812)
AUTHORS Aoki K, Kurabayashi A, Suda K, Odahara M, Goto DB, Shibata D.
TITLE Tomato HTA6 fused to EYFP driven by 35S omega promoter
JOURNAL Unpublished
REFERENCE 3 (bases 1 to 11812)
AUTHORS Aoki K, Kurabayashi A, Suda K, Odahara M, Goto D, Shibata D.
TITLE Direct Submission
JOURNAL Submitted (24-NOV-2011) Contact:Koh Aoki Osaka Prefecture
University, Department of Life and Environmental Sciences; Naka-ku,
Gakuen-cho, 1-1, Sakai, Osaka 599-8531, Japan E-mail
:kaoki@plant.osakafu-u.ac.jp Phone :81-72-254-9421 Fax
:81-72-254-9918
REFERENCE 4 (bases 1 to 11812)
TITLE Direct Submission
REFERENCE 5 (bases 1 to 11812)
AUTHORS .
TITLE Direct Submission
COMMENT SGRef: number: 1; type: "Journal Article"; journalName:
"Unpublished"
COMMENT SGRef: number: 2; type: "Journal Article"; journalName:
"Unpublished"
COMMENT SGRef: number: 3; type: "Journal Article"; journalName: "Submitted
(24-NOV-2011) Contact:Koh Aoki Osaka Prefecture University,
Department of Life and Environmental Sciences"; volume: " Naka-ku,
Gakuen-cho, 1-1, Sakai, Osaka 599-8531, Japan E-mail
:kaoki@plant.osakafu-u.ac.jp Phone :81-72-254-9421 Fax "; pages:
"81-72-254-991"
COMMENT SGRef: number: 4; type: "Journal Article"
FEATURES Location/Qualifiers
source 1..11812
/mol_type="other DNA"
/organism="synthetic DNA construct"
misc_feature complement(21..45)
/label=RB T-DNA repeat
/note="right border repeat from nopaline C58 T-DNA"
primer_bind 248..264
/label=M13 fwd
/note="common sequencing primer, one of multiple similar
variants"
protein_bind 345..369
/label=attB1
/note="recombination site for the Gateway(R) BP reaction"
regulatory 390..1889
/note="tomato promoter, BLAST search(vs SL2.40.fasta)
result/SL2.40ch06:43984851..43983352"
/regulatory_class="promoter"
protein_bind complement(1906..1930)
/label=attB2
/note="recombination site for the Gateway(R) BP reaction"
misc_feature 1955..2392
/gene="SlHTA6"
/note="The nucleotide sequence is identical to GenBank
JN790634.1.; putative histone 2A protein"
gene 1955..2392
/gene="SlHTA6"
/label=SlHTA6
CDS 2399..3115
/label=EYFP
/note="enhanced YFP"
terminator 3135..3382
/label=NOS terminator
/note="nopaline synthase terminator and poly(A) signal"
primer_bind complement(3404..3420)
/label=M13 rev
/note="common sequencing primer, one of multiple similar
variants"
protein_bind 3428..3444
/label=lac operator
/bound_moiety="lac repressor encoded by lacI"
/note="The lac repressor binds to the lac operator to
inhibit transcription in E. coli. This inhibition can be
relieved by adding lactose or
isopropyl-beta-D-thiogalactopyranoside (IPTG)."
promoter complement(3452..3482)
/label=lac promoter
/note="promoter for the E. coli lac operon"
protein_bind complement(3497..3518)
/label=CAP binding site
/note="CAP binding activates transcription in the presence
of cAMP."
promoter 3709..4386
/label=CaMV 35S promoter (enhanced)
/note="cauliflower mosaic virus 35S promoter with a
duplicated enhancer region"
CDS 4455..5243
/label=NeoR/KanR
/note="aminoglycoside phosphotransferase"
polyA_signal 5303..5477
/label=CaMV poly(A) signal
/note="cauliflower mosaic virus polyadenylation signal"
misc_feature complement(5555..5579)
/label=LB T-DNA repeat
/note="left border repeat from nopaline C58 T-DNA"
CDS 6004..6795
/label=KanR
/note="aminoglycoside phosphotransferase"
rep_origin 6885..7473
/label=ori
/note="high-copy-number ColE1/pMB1/pBR322/pUC origin of
replication"
misc_feature complement(7659..7799)
/label=bom
/note="basis of mobility region from pBR322"
rep_origin complement(8143..8337)
/direction=LEFT
/label=pVS1 oriV
/note="origin of replication for the Pseudomonas plasmid
pVS1 (Heeb et al., 2000)"
CDS complement(8406..9470)
/label=pVS1 RepA
/note="replication protein from the Pseudomonas plasmid
pVS1 (Heeb et al., 2000)"
CDS complement(9907..10533)
/label=pVS1 StaA
/note="stability protein from the Pseudomonas plasmid pVS1
(Heeb et al., 2000)"
This page is informational only.