Basic Vector Information
SaBE4-Gam vector Vector Map
Plasmid Resuspension Protocol:
1. Centrifuge at 5,000×g for 5 min.
2. Carefully open the tube and add 20 μl of sterile water to dissolve the DNA.
3. Close the tube and incubate for 10 minutes at room temperature.
4. Briefly vortex the tube and then do a quick spin to concentrate the liquid at the bottom. Speed is less than 5000×g.
5.Store the plasmid at -20 ℃.
SaBE4-Gam vector Sequence
LOCUS SaBE4-Gam. 8601 bp DNA circular SYN 13-MAY-2021 DEFINITION Expresses SaBE4-Gam in mammalian cells. ACCESSION . VERSION . KEYWORDS SaBE4-Gam. SOURCE synthetic DNA construct ORGANISM synthetic DNA construct REFERENCE 1 (bases 1 to 8601) AUTHORS Komor AC, Zhao KT, Packer MS, Gaudelli NM, Waterbury AL, Koblan LW, Kim YB, Badran AH, Liu DR TITLE Improved base excision repair inhibition and bacteriophage Mu Gam protein yields C:G-to-T:A base editors with higher efficiency and product purity. JOURNAL Sci Adv. 2017 Aug 30;3(8):eaao4774. doi: 10.1126/sciadv.aao4774. eCollection 2017 Aug. PUBMED 28875174 REFERENCE 2 (bases 1 to 8601) TITLE Direct Submission REFERENCE 3 (bases 1 to 8601) AUTHORS . TITLE Direct Submission COMMENT SGRef: number: 1; type: "Journal Article"; journalName: "Sci Adv."; date: "2017-08-30"; pages: " 10.1126/sciadv.aao4774. eCollection 2017 Aug" COMMENT SGRef: number: 2; type: "Journal Article" FEATURES Location/Qualifiers source 1..8601 /mol_type="other DNA" /organism="synthetic DNA construct" promoter 132..335 /label=CMV promoter /note="human cytomegalovirus (CMV) immediate early promoter" promoter 377..395 /label=T7 promoter /note="promoter for bacteriophage T7 RNA polymerase" CDS 409..930 /gene="gam" /label=gam /note="Putative DNA ends protecting protein gam from Escherichia phage Mu. Accession#: P06023" CDS 979..1662 /label=APOBEC-1 /note="cytidine deaminase (C to U editing enzyme) from rat" CDS 1762..4917 /label=SaCas9 /note="Cas9 endonuclease from the Staphylococcus aureus Type II CRISPR/Cas system" CDS 4924..4944 /codon_start=1 /product="nuclear localization signal of SV40 (simian virus 40) large T antigen" /label=SV40 NLS /translation="PKKKRKV" CDS 4951..5016 /label=3xFLAG /note="three tandem FLAG(R) epitope tags, followed by an enterokinase cleavage site" CDS 5047..5295 /label=UGI /note="uracil-DNA glycosylase inhibitor from a Bacillus subtilis bacteriophage (Mol et al., 1995)" CDS 5326..5574 /codon_start=1 /product="uracil-DNA glycosylase inhibitor from a Bacillus subtilis bacteriophage (Mol et al., 1995)" /label=UGI /translation="TNLSDIIEKETGKQLVIQESILMLPEEVEEVIGNKPESDILVHTA YDESTDENVMLLTSDAPEYKPWALVIQDSNGENKIKML" CDS 5587..5607 /label=SV40 NLS /note="nuclear localization signal of SV40 (simian virus 40) large T antigen" CDS 5616..5633 /label=6xHis /note="6xHis affinity tag" polyA_signal 5662..5886 /label=bGH poly(A) signal /note="bovine growth hormone polyadenylation signal" primer_bind complement(5957..5973) /label=M13 rev /note="common sequencing primer, one of multiple similar variants" protein_bind complement(5981..5997) /label=lac operator /note="The lac repressor binds to the lac operator to inhibit transcription in E. coli. This inhibition can be relieved by adding lactose or isopropyl-beta-D-thiogalactopyranoside (IPTG)." promoter complement(6005..6035) /label=lac promoter /note="promoter for the E. coli lac operon" protein_bind complement(6050..6071) /label=CAP binding site /note="CAP binding activates transcription in the presence of cAMP." primer_bind complement(6188..6205) /label=L4440 /note="L4440 vector, forward primer" rep_origin complement(6359..6947) /direction=LEFT /label=ori /note="high-copy-number ColE1/pMB1/pBR322/pUC origin of replication" CDS complement(7121..7978) /label=AmpR /note="beta-lactamase" promoter complement(7979..8083) /label=AmpR promoter primer_bind complement(8162..8181) /label=pRS-marker /note="pRS vectors, use to sequence yeast selectable marker" enhancer 8353..8601 /label=CMV enhancer /note="human cytomegalovirus immediate early enhancer"
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