Basic Vector Information
- Vector Name:
- pLenti-sgRNA
- Antibiotic Resistance:
- Ampicillin
- Length:
- 9151 bp
- Type:
- Lentiviral
- Replication origin:
- ori
- Selection Marker:
- Puromycin
- Promoter:
- U6
- Cloning Method:
- Restriction Enzyme
pLenti-sgRNA vector Vector Map
Plasmid Resuspension Protocol:
1. Centrifuge at 5,000×g for 5 min.
2. Carefully open the tube and add 20 μl of sterile water to dissolve the DNA.
3. Close the tube and incubate for 10 minutes at room temperature.
4. Briefly vortex the tube and then do a quick spin to concentrate the liquid at the bottom. Speed is less than 5000×g.
5.Store the plasmid at -20 ℃.
pLenti-sgRNA vector Sequence
LOCUS 40924_27772 9151 bp DNA circular SYN 13-MAY-2021
DEFINITION There is no gene/insert. It is a backbone plasmid that others can
use to insert sgRNAs of interest. The cloning site for this BsmBI.
ACCESSION .
VERSION .
KEYWORDS .
SOURCE synthetic DNA construct
ORGANISM synthetic DNA construct
REFERENCE 1 (bases 1 to 9151)
TITLE pLenti-sgRNA
JOURNAL Unpublished
REFERENCE 2 (bases 1 to 9151)
TITLE Direct Submission
REFERENCE 3 (bases 1 to 9151)
AUTHORS .
TITLE Direct Submission
COMMENT SGRef: number: 1; type: "Journal Article"; journalName:
"Unpublished"
COMMENT SGRef: number: 2; type: "Journal Article"
FEATURES Location/Qualifiers
source 1..9151
/mol_type="other DNA"
/organism="synthetic DNA construct"
primer_bind 138..157
/label=pBR322ori-F
/note="pBR322 origin, forward primer"
primer_bind 391..408
/label=L4440
/note="L4440 vector, forward primer"
protein_bind 525..546
/label=CAP binding site
/note="CAP binding activates transcription in the presence
of cAMP."
promoter 561..591
/label=lac promoter
/note="promoter for the E. coli lac operon"
protein_bind 599..615
/label=lac operator
/note="The lac repressor binds to the lac operator to
inhibit transcription in E. coli. This inhibition can be
relieved by adding lactose or
isopropyl-beta-D-thiogalactopyranoside (IPTG)."
primer_bind 623..639
/label=M13 rev
/note="common sequencing primer, one of multiple similar
variants"
promoter 660..678
/label=T3 promoter
/note="promoter for bacteriophage T3 RNA polymerase"
promoter 706..932
/label=RSV promoter
/note="Rous sarcoma virus enhancer/promoter"
LTR 933..1113
/label=5' LTR (truncated)
/note="truncated 5' long terminal repeat (LTR) from HIV-1"
misc_feature 1160..1285
/label=HIV-1 Psi
/note="packaging signal of human immunodeficiency virus
type 1"
misc_feature 1778..2011
/label=RRE
/note="The Rev response element (RRE) of HIV-1 allows for
Rev-dependent mRNA export from the nucleus to the
cytoplasm."
CDS 2196..2240
/codon_start=1
/label=gp41 peptide
/note="antigenic peptide corresponding to amino acids 655
to 669 of the HIV envelope protein gp41 (Lutje Hulsik et
al., 2013)"
/translation="KNEQELLELDKWASL"
promoter 2418..2658
/label=U6 promoter
/note="RNA polymerase III promoter for human U6 snRNA"
misc_RNA 4548..4623
/label=gRNA scaffold
/note="guide RNA scaffold for the Streptococcus pyogenes
CRISPR/Cas9 system"
misc_feature 4671..4788
/label=cPPT/CTS
/note="central polypurine tract and central termination
sequence of HIV-1"
promoter 4857..5068
/label=EF-1-alpha core promoter
/note="core promoter for human elongation factor
EF-1-alpha"
CDS 5094..5690
/codon_start=1
/label=PuroR
/note="puromycin N-acetyltransferase"
/translation="MTEYKPTVRLATRDDVPRAVRTLAAAFADYPATRHTVDPDRHIER
VTELQELFLTRVGLDIGKVWVADDGAAVAVWTTPESVEAGAVFAEIGPRMAELSGSRLA
AQQQMEGLLAPHRPKEPAWFLATVGVSPDHQGKGLGSAVVLPGVEAAERAGVPAFLETS
APRNLPFYERLGFTVTADVEVPEGPRTWCMTRKPGA"
misc_feature 5709..6297
/label=WPRE
/note="woodchuck hepatitis virus posttranscriptional
regulatory element"
LTR 6369..6602
/label=3' LTR (Delta-U3)
/note="self-inactivating 3' long terminal repeat (LTR) from
HIV-1"
polyA_signal 6680..6814
/label=SV40 poly(A) signal
/note="SV40 polyadenylation signal"
rep_origin 6841..6976
/label=SV40 ori
/note="SV40 origin of replication"
promoter complement(6997..7015)
/label=T7 promoter
/note="promoter for bacteriophage T7 RNA polymerase"
primer_bind complement(7025..7041)
/label=M13 fwd
/note="common sequencing primer, one of multiple similar
variants"
rep_origin 7183..7638
/label=f1 ori
/note="f1 bacteriophage origin of replication; arrow
indicates direction of (+) strand synthesis"
promoter 7664..7768
/label=AmpR promoter
CDS 7769..8626
/codon_start=1
/label=AmpR
/note="beta-lactamase"
/translation="MSIQHFRVALIPFFAAFCLPVFAHPETLVKVKDAEDQLGARVGYI
ELDLNSGKILESFRPEERFPMMSTFKVLLCGAVLSRIDAGQEQLGRRIHYSQNDLVEYS
PVTEKHLTDGMTVRELCSAAITMSDNTAANLLLTTIGGPKELTAFLHNMGDHVTRLDRW
EPELNEAIPNDERDTTMPVAMATTLRKLLTGELLTLASRQQLIDWMEADKVAGPLLRSA
LPAGWFIADKSGAGERGSRGIIAALGPDGKPSRIVVIYTTGSQATMDERNRQIAEIGAS
LIKHW"
rep_origin 8800..9151
/label=ori
/note="high-copy-number ColE1/pMB1/pBR322/pUC origin of
replication"
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