Basic Vector Information
- Vector Name:
- GBT-S1
- Antibiotic Resistance:
- Ampicillin
- Length:
- 6655 bp
- Type:
- Conditional gene trap vector
- Replication origin:
- ori
- Source/Author:
- Grajevskaja V, Camerota D, Bellipanni G, Balciuniene J, Balciunas D.
- Promoter:
- SP6
GBT-S1 vector Vector Map
Plasmid Resuspension Protocol:
1. Centrifuge at 5,000×g for 5 min.
2. Carefully open the tube and add 20 μl of sterile water to dissolve the DNA.
3. Close the tube and incubate for 10 minutes at room temperature.
4. Briefly vortex the tube and then do a quick spin to concentrate the liquid at the bottom. Speed is less than 5000×g.
5.Store the plasmid at -20 ℃.
GBT-S1 vector Sequence
LOCUS 40924_1039 6655 bp DNA circular SYN 17-DEC-2018
DEFINITION Conditional gene trap vector GBT-S1, complete sequence.
ACCESSION .
VERSION .
KEYWORDS .
SOURCE synthetic DNA construct
ORGANISM synthetic DNA construct
REFERENCE 1 (bases 1 to 6655)
AUTHORS Grajevskaja V, Camerota D, Bellipanni G, Balciuniene J, Balciunas D.
TITLE Analysis of a conditional gene trap reveals that tbx5a is required
for heart regeneration in zebrafish
JOURNAL PLoS ONE 13 (6), e0197293 (2018)
PUBMED 29933372
REFERENCE 2 (bases 1 to 6655)
AUTHORS Camerota D, Balciunas D.
TITLE Direct Submission
JOURNAL Submitted (06-JUN-2018) Department of Biology, Temple University,
1900 N 12th St, Philadelphia, PA 19122, USA
REFERENCE 3 (bases 1 to 6655)
TITLE Direct Submission
REFERENCE 4 (bases 1 to 6655)
AUTHORS .
TITLE Direct Submission
COMMENT SGRef: number: 1; type: "Journal Article"; journalName: "PLoS ONE";
date: "2018"; volume: "13"; issue: "6"; pages: "e0197293"
COMMENT SGRef: number: 2; type: "Journal Article"; journalName: "Submitted
(06-JUN-2018) Department of Biology, Temple University, 1900 N 12th
St, Philadelphia, PA 19122, USA"
COMMENT SGRef: number: 3; type: "Journal Article"
COMMENT ##Assembly-Data-START##
Sequencing Technology :: Sanger dideoxy sequencing
##Assembly-Data-END##
FEATURES Location/Qualifiers
source 1..6655
/mol_type="other DNA"
/organism="synthetic DNA construct"
protein_bind 220..253
/label=lox66
/note="Right element (RE) mutant of loxP (Araki et al.,
2010). Cre-mediated recombination occurs in the 8-bp core
sequence (ATGTATGC) (Shaw et al., 2021)."
protein_bind 259..292
/label=FRT (minimal)
/note="supports FLP-mediated excision but not integration
(Turan and Bode, 2011)"
CDS 469..906
/codon_start=1
/label=GAL4 DNA binding domain
/note="DNA binding domain of the GAL4 transcriptional
activator"
/translation="KLLSSIEQACDICRLKKLKCSKEKPKCAKCLKNNWECRYSPKTKR
SPLTRAHLTEVESRLERLEQLFLLIFPREDLDMILKMDSLQDIKALLTGLFVQDNVNKD
AVTDRLASVETDMPLTLRQHRISATSSSEESSNKGQRQLTVS"
protein_bind complement(2151..2184)
/label=FRT (minimal)
/note="supports FLP-mediated excision but not integration
(Turan and Bode, 2011)"
protein_bind complement(2191..2224)
/label=lox71
/note="Left element (LE) mutant of loxP (Araki et al.,
2010). Cre-mediated recombination occurs in the 8-bp core
sequence (ATGTATGC) (Shaw et al., 2021)."
CDS 2485..3201
/codon_start=1
/label=BFP
/note="blue variant of GFP"
/translation="MASKGEELFTGVVPILVELDGDVNGHKFSVSGEGEGDATYGKLTL
KFICTTGKLPVPWPTLVTTLSHGVQCFSRYPDHMKQHDFFKSAMPEGYVQERTIFFKDD
GNYKTRAEVKFEGDTLVNRIELKGIDFKEDGNILGHKLEYNFNSHNVYIMADKQKNGIK
ANFKIRHNIEDGSVQLADHYQQNTPIGDGPVLLPDNHYLSTQSALSKDPNEKRDHMVLL
EFVTAAGITHGMDELYK"
polyA_signal complement(3213..3347)
/label=SV40 poly(A) signal
/note="SV40 polyadenylation signal"
promoter complement(3728..3746)
/label=T7 promoter
/note="promoter for bacteriophage T7 RNA polymerase"
primer_bind complement(3753..3769)
/label=M13 fwd
/note="common sequencing primer, one of multiple similar
variants"
rep_origin 3910..4365
/label=f1 ori
/note="f1 bacteriophage origin of replication; arrow
indicates direction of (+) strand synthesis"
promoter 4443..4547
/label=AmpR promoter
CDS 4548..5405
/codon_start=1
/label=AmpR
/note="beta-lactamase"
/translation="MSIQHFRVALIPFFAAFCLPVFAHPETLVKVKDAEDQLGARVGYI
ELDLNSGKILESFRPEERFPMMSTFKVLLCGAVLSRIDAGQEQLGRRIHYSQNDLVEYS
PVTEKHLTDGMTVRELCSAAITMSDNTAANLLLTTIGGPKELTAFLHNMGDHVTRLDRW
EPELNEAIPNDERDTTMPVAMATTLRKLLTGELLTLASRQQLIDWMEADKVAGPLLRSA
LPAGWFIADKSGAGERGSRGIIAALGPDGKPSRIVVIYTTGSQATMDERNRQIAEIGAS
LIKHW"
rep_origin 5579..6167
/label=ori
/note="high-copy-number ColE1/pMB1/pBR322/pUC origin of
replication"
protein_bind 6455..6476
/label=CAP binding site
/note="CAP binding activates transcription in the presence
of cAMP."
promoter 6491..6521
/label=lac promoter
/note="promoter for the E. coli lac operon"
protein_bind 6529..6545
/label=lac operator
/note="The lac repressor binds to the lac operator to
inhibit transcription in E. coli. This inhibition can be
relieved by adding lactose or
isopropyl-beta-D-thiogalactopyranoside (IPTG)."
primer_bind 6553..6569
/label=M13 rev
/note="common sequencing primer, one of multiple similar
variants"
promoter 6587..6605
/label=SP6 promoter
/note="promoter for bacteriophage SP6 RNA polymerase"
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