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XOR gate BCD-RFP vector (V001507#)

Basic Vector Information

Basic Vector Information
Vector Name XOR gate BCD-RFP Antibiotic Resistance Ampicillin
Length 4914 bp Type Boolean integrase logic vector
Source Courbet A, Endy D, Renard E, Molina F, Bonnet J.

XOR gate BCD-RFP vector Vector Map

prefix_Bba P7 attB TP901-1 attB Bxb1 B0015 attP Bxb1 attP TP901-1 sTRSV HHRz RiboJ mKate2 B0015 suffix_Bba tonB terminator pSC101 Amp resistance T3Te terminator T3Te terminator

XOR gate BCD-RFP vector Sequence

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LOCUS       Exported                4914 bp ds-DNA     circular SYN 18-DEC-2018
DEFINITION  Boolean integrase logic vector XOR gate BCD-RFP, complete sequence.
ACCESSION   KM234323
VERSION     .
KEYWORDS    .
SOURCE      synthetic DNA construct
  ORGANISM  synthetic DNA construct
REFERENCE   1  (bases 1 to 4914)
  AUTHORS   Courbet A, Endy D, Renard E, Molina F, Bonnet J.
  TITLE     Detection of pathological biomarkers in human clinical samples via 
            amplifying genetic switches and logic gates
  JOURNAL   Sci Transl Med 7 (289), 289RA83 (2015)
  PUBMED    26019219
REFERENCE   2  (bases 1 to 4914)
  AUTHORS   Courbet A, Molina F, Endy D, Bonnet J.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-JUL-2014) SysDiag CNRS UMR3145, CNRS, 1682 Rue de la 
            Valsiere, Montpellier, Herault 34184, France
REFERENCE   3  (bases 1 to 4914)
  AUTHORS   .
  TITLE     Direct Submission
COMMENT     ##Assembly-Data-START##
            Sequencing Technology :: Sanger dideoxy sequencing 
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..4914
                     /organism="Boolean integrase logic vector XOR gate
                     BCD-RFP"
                     /mol_type="other DNA"
                     /clone="XOR BCD RFP"
                     /db_xref="taxon:1642392"
     misc_feature    1..22
                     /label=prefix_Bba
                     /note="prefix_Bba"
     regulatory      23..69
                     /regulatory_class="promoter"
                     /note="P7"
     misc_feature    76..128
                     /label=attB TP901-1
                     /note="attB TP901-1"
     misc_feature    129..178
                     /label=attB Bxb1
                     /note="attB Bxb1"
     regulatory      185..313
                     /regulatory_class="terminator"
                     /note="B0015"
     terminator      193..264
                     /label=rrnB T1 terminator
                     /note="transcription terminator T1 from the E. coli rrnB 
                     gene"
     terminator      280..307
                     /label=T7Te terminator
                     /note="phage T7 early transcription terminator"
     misc_feature    320..372
                     /label=attP Bxb1
                     /note="attP Bxb1"
     misc_feature    373..422
                     /label=attP TP901-1
                     /note="attP TP901-1"
     misc_RNA        425..474
                     /label=sTRSV HHRz
                     /note="hammerhead ribozyme from the tobacco ringspot virus 
                     satellite RNA (Khvorova et al., 2003)"
     misc_feature    complement(497..523)
                     /label=RiboJ
                     /note="RiboJ"
     misc_feature    498..582
                     /label=BCD2
                     /note="BCD2"
     RBS             568..576
                     /label=Shine-Dalgarno sequence
                     /note="full consensus sequence for ribosome-binding sites 
                     upstream of start codons in E. coli; complementary to a 
                     region in the 3' end of the 16S rRNA (Chen et al., 1994)"
     CDS             583..1278
                     /codon_start=1
                     /product="mKate2"
                     /label=mKate2
                     /protein_id="AKC96472.1"
                     /translation="MSELIKENMHMKLYMEGTVNNHHFKCTSEGEGKPYEGTQTMRIKA
                     VEGGPLPFAFDILATSFMYGSKTFINHTQGIPDFFKQSFPEGFTWERVTTYEDGGVLTA
                     TQDTSLQDGCLIYNVKIRGVNFPSNGPVMQKKTLGWEASTETLYPADGGLEGRADMALK
                     LVGGGHLICNLKTTYRSKKPAKNLKMPGVYYVDRRLERIKEADKETYVEQHEVAVARYC
                     DLPSKLGHR"
     regulatory      1290..1418
                     /regulatory_class="terminator"
                     /note="B0015"
     terminator      1298..1369
                     /label=rrnB T1 terminator
                     /note="transcription terminator T1 from the E. coli rrnB 
                     gene"
     terminator      1385..1412
                     /label=T7Te terminator
                     /note="phage T7 early transcription terminator"
     misc_feature    1419..1439
                     /label=suffix_Bba
                     /note="suffix_Bba"
     terminator      1475..1506
                     /label=tonB terminator
                     /note="bidirectional E. coli tonB-P14 transcription 
                     terminator"
     rep_origin      1602..3638
                     /label=pSC101
                     /note="pSC101"
     terminator      1631..1725
                     /label=lambda t0 terminator
                     /note="transcription terminator from phage lambda"
     rep_origin      2217..2439
                     /label=pSC101 ori
                     /note="low-copy replication origin that requires the Rep101
                     protein"
     CDS             2487..3437
                     /codon_start=1
                     /gene="rep101"
                     /product="RepA protein needed for replication with the 
                     pSC101 origin"
                     /label=Rep101
                     /translation="MSELVVFKANELAISRYDLTEHETKLILCCVALLNPTIENPTRKE
                     RTVSFTYNQYAQMMNISRENAYGVLAKATRELMTRTVEIRNPLVKGFEIFQWTNYAKFS
                     SEKLELVFSEEILPYLFQLKKFIKYNLEHVKSFENKYSMRIYEWLLKELTQKKTHKANI
                     EISLDEFKFMLMLENNYHEFKRLNQWVLKPISKDLNTYSNMKLVVDKRGRPTDTLIFQV
                     ELDRQMDLVTELENNQIKMNGDKIPTTITSDSYLRNGLRKTLHDALTAKIQLTSFEAKF
                     LSDMQSKHDLNGSFSWLTQKQRTTLENILAKYGRI"
     misc_feature    3647..4589
                     /label=Amp resistance
                     /note="Amp resistance"
     CDS             3726..4586
                     /codon_start=1
                     /gene="bla"
                     /product="beta-lactamase"
                     /label=AmpR
                     /note="confers resistance to ampicillin, carbenicillin, and
                     related antibiotics"
                     /translation="MSIQHFRVALIPFFAAFCLPVFAHPETLVKVKDAEDQLGARVGYI
                     ELDLNSGKILESFRPEERFPMMSTFKVLLCGAVLSRIDAGQEQLGRRIHYSQNDLVEYS
                     PVTEKHLTDGMTVRELCSAAITMSDNTAANLLLTTIGGPKELTAFLHNMGDHVTRLDRW
                     EPELNEAIPNDERDTTMPVAMATTLRKLLTGELLTLASRQQLIDWMEADKVAGPLLRSA
                     LPAGWFIADKSGAGERGSRGIIAALGPDGKPSRIVVIYTTGSQATMDERNRQIAEIGAS
                     LIKHW"
     terminator      4716..4745
                     /label=T3Te terminator
                     /note="phage T3 early transcription terminator"
     terminator      4839..4868
                     /label=T3Te terminator
                     /note="phage T3 early transcription terminator"

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