Basic Vector Information
- Vector Name:
- Lenti-(BB)-hPGK-KRAB-dCas9-P2A-BlastR
- Antibiotic Resistance:
- Ampicillin
- Length:
- 15243 bp
- Type:
- RNA interference
- Replication origin:
- ori
- Host:
- Mammalian cells, Lentivirus
- Selection Marker:
- Blast
- Promoter:
- hPGK
- Growth Strain(s):
- Stbl3
- Growth Temperature:
- 37℃
Lenti-(BB)-hPGK-KRAB-dCas9-P2A-BlastR vector Vector Map
Plasmid Resuspension Protocol:
1. Centrifuge at 5,000×g for 5 min.
2. Carefully open the tube and add 20 μl of sterile water to dissolve the DNA.
3. Close the tube and incubate for 10 minutes at room temperature.
4. Briefly vortex the tube and then do a quick spin to concentrate the liquid at the bottom. Speed is less than 5000×g.
5.Store the plasmid at -20 ℃.
Lenti-(BB)-hPGK-KRAB-dCas9-P2A-BlastR vector Sequence
LOCUS V016594 15243 bp DNA circular SYN 01-JAN-1980
DEFINITION Exported.
ACCESSION V016594
VERSION V016594
KEYWORDS .
SOURCE synthetic DNA construct
ORGANISM synthetic DNA construct
.
REFERENCE 1 (bases 1 to 15243)
AUTHORS .
TITLE Direct Submission
FEATURES Location/Qualifiers
source 1..15243
/mol_type="other DNA"
/organism="synthetic DNA construct"
promoter 14..524
/label="hPGK promoter"
/note="human phosphoglycerate kinase 1 promoter"
CDS 573..758
/label="KRAB"
/note="Kruppel-associated box (KRAB) transcriptional
repression domain from the human zinc finger protein ZNF10
(Margolin et al., 1994)"
CDS 780..4883
/label="dCas9"
/note="catalytically dead mutant of the Cas9 endonuclease
from the Streptococcus pyogenes Type II CRISPR/Cas system"
CDS 5082..5477
/label="BSD"
/note="blasticidin S deaminase"
misc_feature 5505..6093
/label="WPRE"
/note="woodchuck hepatitis virus posttranscriptional
regulatory element"
LTR 6165..6398
/label="3' LTR (Delta-U3)"
/note="self-inactivating 3' long terminal repeat (LTR) from
HIV-1"
polyA_signal 6430..6654
/label="bGH poly(A) signal"
/note="bovine growth hormone polyadenylation signal"
rep_origin 6700..7128
/label="f1 ori"
/note="f1 bacteriophage origin of replication; arrow
indicates direction of (+) strand synthesis"
promoter 7142..7471
/label="SV40 promoter"
/note="SV40 enhancer and early promoter"
promoter 7519..7566
/label="EM7 promoter"
/note="synthetic bacterial promoter"
CDS 7585..7956
/label="BleoR"
/note="antibiotic-binding protein"
polyA_signal 8089..8222
/label="SV40 poly(A) signal"
/note="SV40 polyadenylation signal"
promoter complement(8307..8337)
/label="lac promoter"
/note="promoter for the E. coli lac operon"
protein_bind complement(8352..8373)
/label="CAP binding site"
/note="CAP binding activates transcription in the presence
of cAMP."
rep_origin complement(8661..9249)
/direction=LEFT
/label="ori"
/note="high-copy-number ColE1/pMB1/pBR322/pUC origin of
replication"
CDS complement(9423..10280)
/label="AmpR"
/note="beta-lactamase"
promoter complement(10281..10385)
/label="AmpR promoter"
enhancer 10651..11030
/label="CMV enhancer"
/note="human cytomegalovirus immediate early enhancer"
promoter 11031..11233
/label="CMV promoter"
/note="human cytomegalovirus (CMV) immediate early
promoter"
LTR 11248..11428
/label="5' LTR (truncated)"
/note="truncated 5' long terminal repeat (LTR) from HIV-1"
misc_feature 11475..11600
/label="HIV-1 Psi"
/note="packaging signal of human immunodeficiency virus
type 1"
misc_feature 12093..12326
/label="RRE"
/note="The Rev response element (RRE) of HIV-1 allows for
Rev-dependent mRNA export from the nucleus to the
cytoplasm."
CDS 12511..12555
/label="gp41 peptide"
/note="antigenic peptide corresponding to amino acids 655
to 669 of the HIV envelope protein gp41 (Lutje Hulsik et
al., 2013)"
CDS 12704..12745
/note="Protein Tat from Human immunodeficiency virus type 1
group M subtype B (isolate WMJ22). Accession#: P12509"
/label="Protein Tat"
misc_feature 12853..12970
/label="cPPT/CTS"
/note="central polypurine tract and central termination
sequence of HIV-1"
promoter 13021..13261
/label="U6 promoter"
/note="RNA polymerase III promoter for human U6 snRNA"
misc_RNA 15151..15226
/label="gRNA scaffold"
/note="guide RNA scaffold for the Streptococcus pyogenes
CRISPR/Cas9 system"
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