Basic Vector Information
Basic Vector Information | |||
---|---|---|---|
Vector Name | Clover-Geminin(1-110) | Antibiotic Resistance | Ampicillin |
Length | 7475 bp | Type | Mammalian Expression, Lentiviral |
Copy Number | High Copy | Promoter | CMV |
5' Primer | agctggtttagtgaaccgtcagatc | 3' Primer | ggaaccggaacccttaaaca |
Clover-Geminin(1-110) vector Vector Map
Plasmid Resuspension Protocol:
1. Centrifuge at 5,000×g for 5 min.
2. Carefully open the tube and add 20 μl of sterile water to dissolve the DNA.
3. Close the tube and incubate for 10 minutes at room temperature.
4. Briefly vortex the tube and then do a quick spin to concentrate the liquid at the bottom. Speed is less than 5000×g.
5.Store the plasmid at -20 ℃.
Clover-Geminin(1-110) vector Sequence
LOCUS Exported 7475 bp ds-DNA circular SYN 13-MAY-2021 DEFINITION Fluorescent probe for M/G1 transition. ACCESSION . VERSION . KEYWORDS Clover-Geminin(1-110) SOURCE synthetic DNA construct ORGANISM synthetic DNA construct REFERENCE 1 (bases 1 to 7475) AUTHORS Bajar BT, Lam AJ, Badiee RK, Oh YH, Chu J, Zhou XX, Kim N, Kim BB, Chung M, Yablonovitch AL, Cruz BF, Kulalert K, Tao JJ, Meyer T, Su XD, Lin MZ TITLE Fluorescent indicators for simultaneous reporting of all four cell cycle phases. JOURNAL Nat Methods. 2016 Oct 31. doi: 10.1038/nmeth.4045. PUBMED 27798610 REFERENCE 2 (bases 1 to 7475) AUTHORS . TITLE Direct Submission COMMENT SGRef: number: 1; type: "Journal Article"; journalName: "Nat Methods. 2016 Oct 31. doi: 10.1038/nmeth.4045." FEATURES Location/Qualifiers source 1..7475 /organism="synthetic DNA construct" /mol_type="other DNA" enhancer 63..366 /label=CMV enhancer /note="human cytomegalovirus immediate early enhancer" promoter 368..566 /label=CMV promoter /note="human cytomegalovirus (CMV) immediate early promoter" LTR 584..764 /label=5' LTR (truncated) /note="truncated 5' long terminal repeat (LTR) from HIV-1" misc_feature 811..936 /label=HIV-1 Psi /note="packaging signal of human immunodeficiency virus type 1" misc_feature 1435..1668 /label=RRE /note="The Rev response element (RRE) of HIV-1 allows for Rev-dependent mRNA export from the nucleus to the cytoplasm." CDS 1853..1897 /codon_start=1 /product="antigenic peptide corresponding to amino acids 655 to 669 of the HIV envelope protein gp41 (Lutje Hulsik et al., 2013)" /label=gp41 peptide /note="recognized by the 2H10 single-chain llama nanobody" /translation="KNEQELLELDKWASL" misc_feature 2195..2312 /label=cPPT/CTS /note="central polypurine tract and central termination sequence of HIV-1" promoter 2371..2684 /label=U6 promoter /note="RNA polymerase III promoter for mouse U6 snRNA (Das et al., 1988)" primer_bind 2603..2623 /label=mU6-F /note="Mouse U6 promoter, forward primer" primer_bind 2701..2717 /label=KS primer /note="common sequencing primer, one of multiple similar variants" protein_bind 2759..2792 /label=loxP /bound_moiety="Cre recombinase" /note="Cre-mediated recombination occurs in the 8-bp core sequence (GCATACAT)." enhancer 2908..3211 /label=CMV enhancer /note="human cytomegalovirus immediate early enhancer" promoter 3212..3415 /label=CMV promoter /note="human cytomegalovirus (CMV) immediate early promoter" CDS 3447..4163 /codon_start=1 /product="bright green-yellow fluorescent protein derived from GFP (Lam et al., 2012)" /label=Clover /translation="MVSKGEELFTGVVPILVELDGDVNGHKFSVRGEGEGDATNGKLTL KFICTTGKLPVPWPTLVTTFGYGVACFSRYPDHMKQHDFFKSAMPEGYVQERTISFKDD GTYKTRAEVKFEGDTLVNRIELKGIDFKEDGNILGHKLEYNFNSHNVYITADKQKNGIK ANFKIRHNVEDGSVQLADHYQQNTPIGDGPVLLPDNHYLSHQSALSKDPNEKRDHMVLL EFVTAAGITHGMDELYK" primer_bind complement(3492..3513) /label=EGFP-N /note="EGFP, reverse primer" primer_bind 4100..4121 /label=EGFP-C /note="EGFP, forward primer" CDS 4194..4523 /codon_start=1 /product="degron consisting of residues 1-110 of human Geminin (Zielke and Edgar, 2015)" /label=Gem1 (1-110) /translation="MNPSMKQKQEEIKENIKNSSVPRRTLKMIQPSASGSLVGRENELS AGLSKRKHRNDHLTSTTSSPGVIVPESSENKNLGGVTQESFDLMIKENPSSQYWKEVAE KRRKAL" protein_bind 4562..4595 /label=loxP /bound_moiety="Cre recombinase" /note="Cre-mediated recombination occurs in the 8-bp core sequence (GCATACAT)." misc_feature 4651..5239 /label=WPRE /note="woodchuck hepatitis virus posttranscriptional regulatory element" primer_bind complement(4704..4724) /label=WPRE-R /note="WPRE, reverse primer" CDS complement(5122..5133) /codon_start=1 /product="Factor Xa recognition and cleavage site" /label=Factor Xa site /translation="IEGR" primer_bind complement(5242..5258) /label=KS primer /note="common sequencing primer, one of multiple similar variants" LTR 5481..5661 /label=5' LTR (truncated) /note="truncated 5' long terminal repeat (LTR) from HIV-1" rep_origin complement(5723..6311) /direction=LEFT /label=ori /note="high-copy-number ColE1/pMB1/pBR322/pUC origin of replication" primer_bind complement(5803..5822) /label=pBR322ori-F /note="pBR322 origin, forward primer" CDS complement(6482..7342) /codon_start=1 /gene="bla" /product="beta-lactamase" /label=AmpR /note="confers resistance to ampicillin, carbenicillin, and related antibiotics" /translation="MSIQHFRVALIPFFAAFCLPVFAHPETLVKVKDAEDQLGARVGYI ELDLNSGKILESFRPEERFPMMSTFKVLLCGAVLSRIDAGQEQLGRRIHYSQNDLVEYS PVTEKHLTDGMTVRELCSAAITMSDNTAANLLLTTIGGPKELTAFLHNMGDHVTRLDRW EPELNEAIPNDERDTTMPVAMATTLRKLLTGELLTLASRQQLIDWMEADKVAGPLLRSA LPAGWFIADKSGAGERGSRGIIAALGPDGKPSRIVVIYTTGSQATMDERNRQIAEIGAS LIKHW" primer_bind 7105..7124 /label=Amp-R /note="Ampicillin resistance gene, reverse primer" promoter complement(7343..7447) /gene="bla" /label=AmpR promoter
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