Basic Vector Information
- Vector Name:
- scramble shRNA
- Antibiotic Resistance:
- Ampicillin
- Length:
- 7085 bp
- Type:
- Viral Expression & Packaging Vectors
- Replication origin:
- ori
- Source/Author:
- Sarbassov DD, Guertin DA, Ali SM, Sabatini DM.
- Copy Number:
- High copy number
- Promoter:
- U6
scramble shRNA vector Vector Map
Plasmid Resuspension Protocol:
1. Centrifuge at 5,000×g for 5 min.
2. Carefully open the tube and add 20 μl of sterile water to dissolve the DNA.
3. Close the tube and incubate for 10 minutes at room temperature.
4. Briefly vortex the tube and then do a quick spin to concentrate the liquid at the bottom. Speed is less than 5000×g.
5.Store the plasmid at -20 ℃.
scramble shRNA vector Sequence
LOCUS scramble_shRNA. 7085 bp DNA circular SYN 01-JAN-1980
DEFINITION Third generation lentiviral negative control vector with a scrambled
shRNA.
ACCESSION .
VERSION .
KEYWORDS scramble shRNA.
SOURCE synthetic DNA construct
ORGANISM synthetic DNA construct
REFERENCE 1 (bases 1 to 7085)
AUTHORS Sarbassov DD, Guertin DA, Ali SM, Sabatini DM.
TITLE Phosphorylation and regulation of Akt/PKB by the rictor-mTOR
complex.
JOURNAL Science 2005;307:1098-101.
PUBMED 15718470
REFERENCE 2 (bases 1 to 7085)
AUTHORS Sabatini Lab / Addgene #1864
TITLE Direct Submission
REFERENCE 3 (bases 1 to 7085)
AUTHORS .
TITLE Direct Submission
COMMENT SGRef: number: 1; type: "Journal Article"; journalName: "Science";
date: "2005"; volume: "307"; pages: "1098-101"
COMMENT SGRef: number: 2; type: "Journal Article"
FEATURES Location/Qualifiers
source 1..7085
/mol_type="other DNA"
/organism="synthetic DNA construct"
CDS 169..765
/label=PuroR
/note="puromycin N-acetyltransferase"
LTR 896..1129
/label=3' LTR (Delta-U3)
/note="self-inactivating 3' long terminal repeat (LTR) from
HIV-1"
polyA_signal 1201..1335
/label=SV40 poly(A) signal
/note="SV40 polyadenylation signal"
rep_origin 1362..1497
/label=SV40 ori
/note="SV40 origin of replication"
promoter complement(1518..1536)
/label=T7 promoter
/note="promoter for bacteriophage T7 RNA polymerase"
primer_bind complement(1546..1562)
/label=M13 fwd
/note="common sequencing primer, one of multiple similar
variants"
rep_origin 1704..2159
/label=f1 ori
/note="f1 bacteriophage origin of replication; arrow
indicates direction of (+) strand synthesis"
promoter 2185..2289
/label=AmpR promoter
CDS 2290..3147
/label=AmpR
/note="beta-lactamase"
rep_origin 3321..3909
/label=ori
/note="high-copy-number ColE1/pMB1/pBR322/pUC origin of
replication"
protein_bind 4197..4218
/label=CAP binding site
/note="CAP binding activates transcription in the presence
of cAMP."
promoter 4233..4263
/label=lac promoter
/note="promoter for the E. coli lac operon"
protein_bind 4271..4287
/label=lac operator
/note="The lac repressor binds to the lac operator to
inhibit transcription in E. coli. This inhibition can be
relieved by adding lactose or
isopropyl-beta-D-thiogalactopyranoside (IPTG)."
primer_bind 4295..4311
/label=M13 rev
/note="common sequencing primer, one of multiple similar
variants"
promoter 4332..4350
/label=T3 promoter
/note="promoter for bacteriophage T3 RNA polymerase"
promoter 4378..4604
/label=RSV promoter
/note="Rous sarcoma virus enhancer/promoter"
LTR 4605..4785
/label=5' LTR (truncated)
/note="5' LTR (truncated)"
/note="truncated 5' long terminal repeat (LTR) from HIV-1"
misc_feature 4832..4957
/label=HIV-1 Psi
/note="packaging signal of human immunodeficiency virus
type 1"
misc_feature 5450..5683
/label=RRE
/note="The Rev response element (RRE) of HIV-1 allows for
Rev-dependent mRNA export from the nucleus to the
cytoplasm."
CDS 5868..5912
/label=gp41 peptide
/note="antigenic peptide corresponding to amino acids 655
to 669 of the HIV envelope protein gp41 (Lutje Hulsik et
al., 2013)"
CDS 6061..6102
/note="Protein Tat from Human immunodeficiency virus type 1
group M subtype B (isolate WMJ22). Accession#: P12509"
promoter 6210..6450
/label=U6 promoter
/note="RNA polymerase III promoter for human U6 snRNA"
misc_RNA 6462..6509
/label=shRNA
/note="shRNA"
misc_feature 6556..6673
/label=cPPT/CTS
/note="central polypurine tract and central termination
sequence of HIV-1"
promoter 6722..7085
/label=hPGK promoter
/note="human phosphoglycerate kinase 1 promoter"
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