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scramble shRNA vector (V010338#)

Basic Vector Information

Basic Vector Information
Vector Name scramble shRNA Antibiotic Resistance Ampicillin
Length 7085 bp Type Viral Expression & Packaging Vectors
Source Sarbassov DD, Guertin DA, Ali SM, Sabatini DM. Copy Number High copy number

scramble shRNA vector Vector Map

PuroR 3' LTR (Delta-U3) SV40 poly(A) signal SV40 ori f1 ori bla bla ori RSV promoter 5' LTR (truncated) HIV-1 Psi RRE U6 promoter shRNA cPPT/CTS

scramble shRNA vector Sequence

Copy Sequence

Download GeneBank File(.gb)

LOCUS       Exported                7085 bp ds-DNA    circular SYN 08-9-2016
DEFINITION  Third generation lentiviral negative control vector with a scrambled
            shRNA.
ACCESSION   .
VERSION     .
KEYWORDS    scramble shRNA
SOURCE      synthetic DNA construct
  ORGANISM  synthetic DNA construct
REFERENCE   1  (bases 1 to 7085)
  AUTHORS   Sarbassov DD, Guertin DA, Ali SM, Sabatini DM.
  TITLE     Phosphorylation and regulation of Akt/PKB by the rictor-mTOR 
            complex.
  JOURNAL   Science 2005;307:1098-101.
  PUBMED    15718470
REFERENCE   2  (bases 1 to 7085)
  AUTHORS   Sabatini Lab / Addgene #1864
  TITLE     Direct Submission
FEATURES             Location/Qualifiers
     source          1..7085
                     /organism="synthetic DNA construct"
                     /lab_host="Mammalian Cells"
                     /mol_type="other DNA"
     CDS             169..768
                     /codon_start=1
                     /gene="pac from Streptomyces alboniger"
                     /product="puromycin N-acetyltransferase"
                     /note="PuroR"
                     /note="confers resistance to puromycin"
                     /translation="MTEYKPTVRLATRDDVPRAVRTLAAAFADYPATRHTVDPDRHIER
                     VTELQELFLTRVGLDIGKVWVADDGAAVAVWTTPESVEAGAVFAEIGPRMAELSGSRLA
                     AQQQMEGLLAPHRPKEPAWFLATVGVSPDHQGKGLGSAVVLPGVEAAERAGVPAFLETS
                     APRNLPFYERLGFTVTADVEVPEGPRTWCMTRKPGA"
     LTR             896..1129
                     /note="3' LTR (Delta-U3)"
                     /note="self-inactivating 3' long terminal repeat (LTR) from
                     HIV-1"
     polyA_signal    1201..1322
                     /note="SV40 poly(A) signal"
                     /note="SV40 polyadenylation signal"
     rep_origin      1362..1497
                     /note="SV40 ori"
                     /note="SV40 origin of replication"
     rep_origin      1704..2159
                     /direction=RIGHT
                     /note="f1 ori"
                     /note="f1 bacteriophage origin of replication; arrow 
                     indicates direction of (+) strand synthesis"
     promoter        2185..2289
                     /gene="bla"
                     /note="AmpR promoter"
     CDS             2290..3150
                     /codon_start=1
                     /gene="bla"
                     /product="beta-lactamase"
                     /note="AmpR"
                     /note="confers resistance to ampicillin, carbenicillin, and
                     related antibiotics"
                     /translation="MSIQHFRVALIPFFAAFCLPVFAHPETLVKVKDAEDQLGARVGYI
                     ELDLNSGKILESFRPEERFPMMSTFKVLLCGAVLSRIDAGQEQLGRRIHYSQNDLVEYS
                     PVTEKHLTDGMTVRELCSAAITMSDNTAANLLLTTIGGPKELTAFLHNMGDHVTRLDRW
                     EPELNEAIPNDERDTTMPVAMATTLRKLLTGELLTLASRQQLIDWMEADKVAGPLLRSA
                     LPAGWFIADKSGAGERGSRGIIAALGPDGKPSRIVVIYTTGSQATMDERNRQIAEIGAS
                     LIKHW"
     rep_origin      3321..3909
                     /direction=RIGHT
                     /note="ori"
                     /note="high-copy-number ColE1/pMB1/pBR322/pUC origin of 
                     replication"
     promoter        4378..4604
                     /note="RSV promoter"
                     /note="Rous sarcoma virus enhancer/promoter"
     LTR             4605..4785
                     /note="5' LTR (truncated)"
                     /note="truncated 5' long terminal repeat (LTR) from HIV-1"
     misc_feature    4832..4957
                     /note="HIV-1 Psi"
                     /note="packaging signal of human immunodeficiency virus 
                     type 1"
     misc_feature    5450..5683
                     /note="RRE"
                     /note="The Rev response element (RRE) of HIV-1 allows for 
                     Rev-dependent mRNA export from the nucleus to the 
                     cytoplasm."
     promoter        6210..6450
                     /note="U6 promoter"
                     /note="RNA polymerase III promoter for human U6 snRNA"
     misc_RNA        6462..6509
                     /note="shRNA"
     misc_feature    6556..6673
                     /note="cPPT/CTS"
                     /note="central polypurine tract and central termination 
                     sequence of HIV-1"
     promoter        6722..147
                     /note="hPGK promoter"
                     /note="human phosphoglycerate kinase 1 promoter"

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