LOCUS V034788 7697 bp DNA circular SYN 01-JAN-1980 DEFINITION synthetic circular DNA. ACCESSION V034788 VERSION V034788 KEYWORDS . SOURCE . ORGANISM . . FEATURES Location/Qualifiers LTR 234..414 /note="truncated 5' long terminal repeat (LTR) from HIV-1" /label="5' LTR (truncated)" misc_feature 458..583 /note="packaging signal of human immunodeficiency virus type 1" /label="HIV-1 Ψ" misc_feature 1076..1309 /note="The Rev response element (RRE) of HIV-1 allows for Rev-dependent mRNA export from the nucleus to the cytoplasm." /label="RRE" CDS 1493..1537 /codon_start=1 /note="recognized by the 2H10 single-chain llama nanobody" /product="antigenic peptide corresponding to amino acids 655 to 669 of the HIV envelope protein gp41 (Lutje Hulsik et al., 2013)" /transl_table=1 /translation="KNEQELLELDKWASL" /label="gp41 peptide" misc_feature 1804..1920 /note="central polypurine tract and central termination sequence of HIV-1" /label="cPPT/CTS" promoter 2010..2213 /note="human cytomegalovirus (CMV) immediate early promoter" /label="CMV promoter" CDS 2305..2331 /codon_start=1 /product="HA (human influenza hemagglutinin) epitope tag" /transl_table=1 /translation="YPYDVPDYA" /label="HA" CDS 2332..2616 /label="SUMO2(NM_006937)" /note="SUMO2(NM_006937)" /gene="SUMO2" promoter 2667..2878 /note="core promoter for human elongation factor EF-1α" /label="EF-1α core promoter" LTR 2891..3159 /note="truncated 5' long terminal repeat (LTR) from human T-cell leukemia virus (HTLV) type 1" /label="5' LTR (truncated)" CDS 3186..3785 /codon_start=1 /gene="pac from Streptomyces alboniger" /note="confers resistance to puromycin" /product="puromycin N-acetyltransferase" /transl_table=1 /translation="MTEYKPTVRLATRDDVPRAVRTLAAAFADYPATRHTVDPDRHIER VTELQELFLTRVGLDIGKVWVADDGAAVAVWTTPESVEAGAVFAEIGPRMAELSGSRLA AQQQMEGLLAPHRPKEPAWFLATVGVSPDHQGKGLGSAVVLPGVEAAERAGVPAFLETS APRNLPFYERLGFTVTADVEVPEGPRTWCMTRKPGA*" /label="PuroR" misc_feature 3792..4380 /note="woodchuck hepatitis virus posttranscriptional regulatory element" /label="WPRE" LTR 4454..4687 /note="self-inactivating 3' long terminal repeat (LTR) from HIV-1" /label="3' LTR (ΔU3)" polyA_signal 4759..4880 /note="SV40 polyadenylation signal" /label="SV40 poly(A) signal" rep_origin 4899..5034 /note="SV40 origin of replication" /label="SV40 ori" primer_bind complement(5072..5088) /note="common sequencing primer, one of multiple similar variants" /label="M13 rev" protein_bind 5096..5112 /bound_moiety="lac repressor encoded by lacI" /note="The lac repressor binds to the lac operator to inhibit transcription in E. coli. This inhibition can be relieved by adding lactose or isopropyl-β-D-thiogalactopyranoside (IPTG)." /label="lac operator" promoter complement(5120..5150) /note="promoter for the E. coli lac operon" /label="lac promoter" protein_bind 5165..5186 /bound_moiety="E. coli catabolite activator protein" /note="CAP binding activates transcription in the presence of cAMP." /label="CAP binding site" rep_origin complement(5474..6062) /direction=LEFT /note="high-copy-number ColE1/pMB1/pBR322/pUC origin of replication" /label="ori" CDS complement(6233..7093) /codon_start=1 /gene="bla" /note="confers resistance to ampicillin, carbenicillin, and related antibiotics" /product="β-lactamase" /transl_table=1 /translation="MSIQHFRVALIPFFAAFCLPVFA,HPETLVKVKDAEDQLGARVGY IELDLNSGKILESFRPEERFPMMSTFKVLLCGAVLSRIDAGQEQLGRRIHYSQNDLVEY SPVTEKHLTDGMTVRELCSAAITMSDNTAANLLLTTIGGPKELTAFLHNMGDHVTRLDR WEPELNEAIPNDERDTTMPVAMATTLRKLLTGELLTLASRQQLIDWMEADKVAGPLLRS ALPAGWFIADKSGAGERGSRGIIAALGPDGKPSRIVVIYTTGSQATMDERNRQIAEIGA SLIKHW*" /label="AmpR" promoter complement(7094..7198) /gene="bla" /label="AmpR promoter" primer_bind 7672..7688 /note="common sequencing primer, one of multiple similar variants" /label="M13 fwd" ORIGIN 1 acgcgtgtag tcttatgcaa tactcttgta gtcttgcaac atggtaacga tgagttagca 61 acatgcctta caaggagaga aaaagcaccg tgcatgccga ttggtggaag taaggtggta 121 cgatcgtgcc ttattaggaa ggcaacagac gggtctgaca tggattggac gaaccactga 181 attgccgcat tgcagagata ttgtatttaa gtgcctagct cgatacaata aacgggtctc 241 tctggttaga ccagatctga gcctgggagc tctctggcta actagggaac ccactgctta 301 agcctcaata aagcttgcct tgagtgcttc aagtagtgtg tgcccgtctg ttgtgtgact 361 ctggtaacta gagatccctc agaccctttt agtcagtgtg gaaaatctct agcagtggcg 421 cccgaacagg gacctgaaag cgaaagggaa accagagctc tctcgacgca ggactcggct 481 tgctgaagcg cgcacggcaa gaggcgaggg gcggcgactg gtgagtacgc caaaaatttt 541 gactagcgga ggctagaagg agagagatgg gtgcgagagc gtcagtatta agcgggggag 601 aattagatcg cgatgggaaa aaattcggtt aaggccaggg ggaaagaaaa aatataaatt 661 aaaacatata gtatgggcaa gcagggagct agaacgattc gcagttaatc ctggcctgtt 721 agaaacatca gaaggctgta gacaaatact gggacagcta caaccatccc ttcagacagg 781 atcagaagaa cttagatcat tatataatac agtagcaacc ctctattgtg tgcatcaaag 841 gatagagata aaagacacca aggaagcttt agacaagata gaggaagagc aaaacaaaag 901 taagaccacc gcacagcaag cggccactga tcttcagacc tggaggagga gatatgaggg 961 acaattggag aagtgaatta tataaatata aagtagtaaa aattgaacca ttaggagtag 1021 cacccaccaa ggcaaagaga agagtggtgc agagagaaaa aagagcagtg ggaataggag 1081 ctttgttcct tgggttcttg ggagcagcag gaagcactat gggcgcagcc tcaatgacgc 1141 tgacggtaca ggccagacaa ttattgtctg gtatagtgca gcagcagaac aatttgctga 1201 gggctattga ggcgcaacag catctgttgc aactcacagt ctggggcatc aagcagctcc 1261 aggcaagaat cctggctgtg gaaagatacc taaaggatca acagctcctg gggatttggg 1321 gttgctctgg aaaactcatt tgcaccactg ctgtgccttg gaatgctagt tggagtaata 1381 aatctctgga acagattgga atcacacgac ctggatggag tgggacagag aaattaacaa 1441 ttacacaagc ttaatacact ccttaattga agaatcgcaa aaccagcaag aaaagaatga 1501 acaagaatta ttggaattag ataaatgggc aagtttgtgg aattggttta acataacaaa 1561 ttggctgtgg tatataaaat tattcataat gatagtagga ggcttggtag gtttaagaat 1621 agtttttgct gtactttcta tagtgaatag agttaggcag ggatattcac cattatcgtt 1681 tcagacccac ctcccaaccc cgaggggacc cgacaggccc gaaggaatag aagaagaagg 1741 tggagagaga gacagagaca gatccattcg attagtgaac ggatctcgac ggtatcggtt 1801 aacttttaaa agaaaagggg ggattggggg gtacagtgca ggggaaagaa tagtagacat 1861 aatagcaaca gacatacaaa ctaaagaatt acaaaaacaa attacaaaat tcaaaatttt 1921 atcgatacta gtattatgcc cagtacatga ccttatggga ctttcctact tggcagtaca 1981 tctacgtatt agtcatcgct attaccatgg tgatgcggtt ttggcagtac atcaatgggc 2041 gtggatagcg gtttgactca cggggatttc caagtctcca ccccattgac gtcaatggga 2101 gtttgttttg gcaccaaaat caacgggact ttccaaaatg tcgtaacaac tccgccccat 2161 tgacgcaaat gggcggtagg cgtgtacggt gggaggttta tataagcaga gctcgtttag 2221 tgaaccgtca gatcgcctgg agacgccatc cacgctgttt tgacctccat agaagattct 2281 agagctagcg aattcgccac catgtatcct tatgatgtcc cagactacgc aatggccgac 2341 gaaaagccca aggaaggagt caagactgag aacaacgatc atattaattt gaaggtggcg 2401 gggcaggatg gttctgtggt gcagtttaag attaagaggc atacaccact tagtaaacta 2461 atgaaagcct attgtgaacg acagggattg tcaatgaggc agatcagatt ccgatttgac 2521 gggcaaccaa tcaatgaaac agacacacct gcacagttgg aaatggagga tgaagataca 2581 attgatgtgt tccaacagca gacgggaggt gtctactgag gatccgcggc cgcgaaggat 2641 ctgcgatcgc tccggtgccc gtcagtgggc agagcgcaca tcgcccacag tccccgagaa 2701 gttgggggga ggggtcggca attgaacggg tgcctagaga aggtggcgcg gggtaaactg 2761 ggaaagtgat gtcgtgtact ggctccgcct ttttcccgag ggtgggggag aaccgtatat 2821 aagtgcagta gtcgccgtga acgttctttt tcgcaacggg tttgccgcca gaacacagct 2881 gaagcttcga ggggctcgca tctctccttc acgcgcccgc cgccctacct gaggccgcca 2941 tccacgccgg ttgagtcgcg ttctgccgcc tcccgcctgt ggtgcctcct gaactgcgtc 3001 cgccgtctag gtaagtttaa agctcaggtc gagaccgggc ctttgtccgg cgctcccttg 3061 gagcctacct agactcagcc ggctctccac gctttgcctg accctgcttg ctcaactcta 3121 cgtctttgtt tcgttttctg ttctgcgccg ttacagatcc aagctgtgac cggcgcctac 3181 gctagatgac cgagtacaag cccacggtgc gcctcgccac ccgcgacgac gtcccccggg 3241 ccgtacgcac cctcgccgcc gcgttcgccg actaccccgc cacgcgccac accgtcgacc 3301 cggaccgcca catcgagcgg gtcaccgagc tgcaagaact cttcctcacg cgcgtcgggc 3361 tcgacatcgg caaggtgtgg gtcgcggacg acggcgccgc ggtggcggtc tggaccacgc 3421 cggagagcgt cgaagcgggg gcggtgttcg ccgagatcgg cccgcgcatg gccgagttga 3481 gcggttcccg gctggccgcg cagcaacaga tggaaggcct cctggcgccg caccggccca 3541 aggagcccgc gtggttcctg gccaccgtcg gcgtctcgcc cgaccaccag ggcaagggtc 3601 tgggcagcgc cgtcgtgctc cccggagtgg aggcggccga gcgcgccggg gtgcccgcct 3661 tcctggagac ctccgcgccc cgcaacctcc ccttctacga gcggctcggc ttcaccgtca 3721 ccgccgacgt cgaggtgccc gaaggaccgc gcacctggtg catgacccgc aagcccggtg 3781 cctgagtcga caatcaacct ctggattaca aaatttgtga aagattgact ggtattctta 3841 actatgttgc tccttttacg ctatgtggat acgctgcttt aatgcctttg tatcatgcta 3901 ttgcttcccg tatggctttc attttctcct ccttgtataa atcctggttg ctgtctcttt 3961 atgaggagtt gtggcccgtt gtcaggcaac gtggcgtggt gtgcactgtg tttgctgacg 4021 caacccccac tggttggggc attgccacca cctgtcagct cctttccggg actttcgctt 4081 tccccctccc tattgccacg gcggaactca tcgccgcctg ccttgcccgc tgctggacag 4141 gggctcggct gttgggcact gacaattccg tggtgttgtc ggggaaatca tcgtcctttc 4201 cttggctgct cgcctgtgtt gccacctgga ttctgcgcgg gacgtccttc tgctacgtcc 4261 cttcggccct caatccagcg gaccttcctt cccgcggcct gctgccggct ctgcggcctc 4321 ttccgcgtct tcgccttcgc cctcagacga gtcggatctc cctttgggcc gcctccccgc 4381 ctggtacctt taagaccaat gacttacaag gcagctgtag atcttagcca ctttttaaaa 4441 gaaaaggggg gactggaagg gctaattcac tcccaacgaa aataagatct gctttttgct 4501 tgtactgggt ctctctggtt agaccagatc tgagcctggg agctctctgg ctaactaggg 4561 aacccactgc ttaagcctca ataaagcttg ccttgagtgc ttcaagtagt gtgtgcccgt 4621 ctgttgtgtg actctggtaa ctagagatcc ctcagaccct tttagtcagt gtggaaaatc 4681 tctagcagta gtagttcatg tcatcttatt attcagtatt tataacttgc aaagaaatga 4741 atatcagaga gtgagaggaa cttgtttatt gcagcttata atggttacaa ataaagcaat 4801 agcatcacaa atttcacaaa taaagcattt ttttcactgc attctagttg tggtttgtcc 4861 aaactcatca atgtatctta tcatgtctgg ctctagctat cccgccccta actccgccca 4921 gttccgccca ttctccgccc catggctgac taattttttt tatttatgca gaggccgagg 4981 ccgcctcggc ctctgagcta ttccagaagt agtgaggagg cttttttgga ggcctagact 5041 tttgcagaga cggcccaaat tcgtaatcat ggtcatagct gtttcctgtg tgaaattgtt 5101 atccgctcac aattccacac aacatacgag ccggaagcat aaagtgtaaa gcctggggtg 5161 cctaatgagt gagctaactc acattaattg cgttgcgctc actgcccgct ttccagtcgg 5221 gaaacctgtc gtgccagctg cattaatgaa tcggccaacg cgcggggaga ggcggtttgc 5281 gtattgggcg ctcttccgct tcctcgctca ctgactcgct gcgctcggtc gttcggctgc 5341 ggcgagcggt atcagctcac tcaaaggcgg taatacggtt atccacagaa tcaggggata 5401 acgcaggaaa gaacatgtga gcaaaaggcc agcaaaaggc caggaaccgt aaaaaggccg 5461 cgttgctggc gtttttccat aggctccgcc cccctgacga gcatcacaaa aatcgacgct 5521 caagtcagag gtggcgaaac ccgacaggac tataaagata ccaggcgttt ccccctggaa 5581 gctccctcgt gcgctctcct gttccgaccc tgccgcttac cggatacctg tccgcctttc 5641 tcccttcggg aagcgtggcg ctttctcata gctcacgctg taggtatctc agttcggtgt 5701 aggtcgttcg ctccaagctg ggctgtgtgc acgaaccccc cgttcagccc gaccgctgcg 5761 ccttatccgg taactatcgt cttgagtcca acccggtaag acacgactta tcgccactgg 5821 cagcagccac tggtaacagg attagcagag cgaggtatgt aggcggtgct acagagttct 5881 tgaagtggtg gcctaactac ggctacacta gaaggacagt atttggtatc tgcgctctgc 5941 tgaagccagt taccttcgga aaaagagttg gtagctcttg atccggcaaa caaaccaccg 6001 ctggtagcgg tggttttttt gtttgcaagc agcagattac gcgcagaaaa aaaggatctc 6061 aagaagatcc tttgatcttt tctacggggt ctgacgctca gtggaacgaa aactcacgtt 6121 aagggatttt ggtcatgaga ttatcaaaaa ggatcttcac ctagatcctt ttaaattaaa 6181 aatgaagttt taaatcaatc taaagtatat atgagtaaac ttggtctgac agttaccaat 6241 gcttaatcag tgaggcacct atctcagcga tctgtctatt tcgttcatcc atagttgcct 6301 gactccccgt cgtgtagata actacgatac gggagggctt accatctggc cccagtgctg 6361 caatgatacc gcgagaccca cgctcaccgg ctccagattt atcagcaata aaccagccag 6421 ccggaagggc cgagcgcaga agtggtcctg caactttatc cgcctccatc cagtctatta 6481 attgttgccg ggaagctaga gtaagtagtt cgccagttaa tagtttgcgc aacgttgttg 6541 ccattgctac aggcatcgtg gtgtcacgct cgtcgtttgg tatggcttca ttcagctccg 6601 gttcccaacg atcaaggcga gttacatgat cccccatgtt gtgcaaaaaa gcggttagct 6661 ccttcggtcc tccgatcgtt gtcagaagta agttggccgc agtgttatca ctcatggtta 6721 tggcagcact gcataattct cttactgtca tgccatccgt aagatgcttt tctgtgactg 6781 gtgagtactc aaccaagtca ttctgagaat agtgtatgcg gcgaccgagt tgctcttgcc 6841 cggcgtcaat acgggataat accgcgccac atagcagaac tttaaaagtg ctcatcattg 6901 gaaaacgttc ttcggggcga aaactctcaa ggatcttacc gctgttgaga tccagttcga 6961 tgtaacccac tcgtgcaccc aactgatctt cagcatcttt tactttcacc agcgtttctg 7021 ggtgagcaaa aacaggaagg caaaatgccg caaaaaaggg aataagggcg acacggaaat 7081 gttgaatact catactcttc ctttttcaat attattgaag catttatcag ggttattgtc 7141 tcatgagcgg atacatattt gaatgtattt agaaaaataa acaaataggg gttccgcgca 7201 catttccccg aaaagtgcca cctgacgtct aagaaaccat tattatcatg acattaacct 7261 ataaaaatag gcgtatcacg aggccctttc gtctcgcgcg tttcggtgat gacggtgaaa 7321 acctctgaca catgcagctc ccggagacgg tcacagcttg tctgtaagcg gatgccggga 7381 gcagacaagc ccgtcagggc gcgtcagcgg gtgttggcgg gtgtcggggc tggcttaact 7441 atgcggcatc agagcagatt gtactgagag tgcaccatat gcggtgtgaa ataccgcaca 7501 gatgcgtaag gagaaaatac cgcatcaggc gccattcgcc attcaggctg cgcaactgtt 7561 gggaagggcg atcggtgcgg gcctcttcgc tattacgcca gctggcgaaa gggggatgtg 7621 ctgcaaggcg attaagttgg gtaacgccag ggttttccca gtcacgacgt tgtaaaacga 7681 cggccagtgc caagctg //