LOCUS V041684 8108 bp DNA circular SYN 01-JAN-1980 DEFINITION synthetic circular DNA. ACCESSION V041684 VERSION V041684 KEYWORDS . SOURCE . ORGANISM . . FEATURES Location/Qualifiers LTR 234..414 /note="truncated 5' long terminal repeat (LTR) from HIV-1" /label="5' LTR (truncated)" misc_feature 458..583 /note="packaging signal of human immunodeficiency virus type 1" /label="HIV-1 Ψ" misc_feature 1076..1309 /note="The Rev response element (RRE) of HIV-1 allows for Rev-dependent mRNA export from the nucleus to the cytoplasm." /label="RRE" CDS 1493..1537 /codon_start=1 /note="recognized by the 2H10 single-chain llama nanobody" /product="antigenic peptide corresponding to amino acids 655 to 669 of the HIV envelope protein gp41 (Lutje Hulsik et al., 2013)" /transl_table=1 /translation="KNEQELLELDKWASL" /label="gp41 peptide" misc_feature 1804..1920 /note="central polypurine tract and central termination sequence of HIV-1" /label="cPPT/CTS" promoter 2010..2213 /note="human cytomegalovirus (CMV) immediate early promoter" /label="CMV promoter" CDS 2302..2940 /label="Fhit(NM_001308285)" /note="Fhit(NM_001308285)" /gene="Fhit" CDS 2947..2973 /codon_start=1 /product="HA (human influenza hemagglutinin) epitope tag" /transl_table=1 /translation="YPYDVPDYA" /label="HA" CDS 2977..3003 /codon_start=1 /product="HA (human influenza hemagglutinin) epitope tag" /transl_table=1 /translation="YPYDVPDYA" /label="HA" CDS 3007..3033 /codon_start=1 /product="HA (human influenza hemagglutinin) epitope tag" /transl_table=1 /translation="YPYDVPDYA" /label="HA" promoter 3078..3289 /note="core promoter for human elongation factor EF-1α" /label="EF-1α core promoter" LTR 3302..3570 /note="truncated 5' long terminal repeat (LTR) from human T-cell leukemia virus (HTLV) type 1" /label="5' LTR (truncated)" CDS 3597..4196 /codon_start=1 /gene="pac from Streptomyces alboniger" /note="confers resistance to puromycin" /product="puromycin N-acetyltransferase" /transl_table=1 /translation="MTEYKPTVRLATRDDVPRAVRTLAAAFADYPATRHTVDPDRHIER VTELQELFLTRVGLDIGKVWVADDGAAVAVWTTPESVEAGAVFAEIGPRMAELSGSRLA AQQQMEGLLAPHRPKEPAWFLATVGVSPDHQGKGLGSAVVLPGVEAAERAGVPAFLETS APRNLPFYERLGFTVTADVEVPEGPRTWCMTRKPGA*" /label="PuroR" misc_feature 4203..4791 /note="woodchuck hepatitis virus posttranscriptional regulatory element" /label="WPRE" LTR 4865..5098 /note="self-inactivating 3' long terminal repeat (LTR) from HIV-1" /label="3' LTR (ΔU3)" polyA_signal 5170..5291 /note="SV40 polyadenylation signal" /label="SV40 poly(A) signal" rep_origin 5310..5445 /note="SV40 origin of replication" /label="SV40 ori" primer_bind complement(5483..5499) /note="common sequencing primer, one of multiple similar variants" /label="M13 rev" protein_bind 5507..5523 /bound_moiety="lac repressor encoded by lacI" /note="The lac repressor binds to the lac operator to inhibit transcription in E. coli. This inhibition can be relieved by adding lactose or isopropyl-β-D-thiogalactopyranoside (IPTG)." /label="lac operator" promoter complement(5531..5561) /note="promoter for the E. coli lac operon" /label="lac promoter" protein_bind 5576..5597 /bound_moiety="E. coli catabolite activator protein" /note="CAP binding activates transcription in the presence of cAMP." /label="CAP binding site" rep_origin complement(5885..6473) /direction=LEFT /note="high-copy-number ColE1/pMB1/pBR322/pUC origin of replication" /label="ori" CDS complement(6644..7504) /codon_start=1 /gene="bla" /note="confers resistance to ampicillin, carbenicillin, and related antibiotics" /product="β-lactamase" /transl_table=1 /translation="MSIQHFRVALIPFFAAFCLPVFA,HPETLVKVKDAEDQLGARVGY IELDLNSGKILESFRPEERFPMMSTFKVLLCGAVLSRIDAGQEQLGRRIHYSQNDLVEY SPVTEKHLTDGMTVRELCSAAITMSDNTAANLLLTTIGGPKELTAFLHNMGDHVTRLDR WEPELNEAIPNDERDTTMPVAMATTLRKLLTGELLTLASRQQLIDWMEADKVAGPLLRS ALPAGWFIADKSGAGERGSRGIIAALGPDGKPSRIVVIYTTGSQATMDERNRQIAEIGA SLIKHW*" /label="AmpR" promoter complement(7505..7609) /gene="bla" /label="AmpR promoter" primer_bind 8083..8099 /note="common sequencing primer, one of multiple similar variants" /label="M13 fwd" ORIGIN 1 acgcgtgtag tcttatgcaa tactcttgta gtcttgcaac atggtaacga tgagttagca 61 acatgcctta caaggagaga aaaagcaccg tgcatgccga ttggtggaag taaggtggta 121 cgatcgtgcc ttattaggaa ggcaacagac gggtctgaca tggattggac gaaccactga 181 attgccgcat tgcagagata ttgtatttaa gtgcctagct cgatacaata aacgggtctc 241 tctggttaga ccagatctga gcctgggagc tctctggcta actagggaac ccactgctta 301 agcctcaata aagcttgcct tgagtgcttc aagtagtgtg tgcccgtctg ttgtgtgact 361 ctggtaacta gagatccctc agaccctttt agtcagtgtg gaaaatctct agcagtggcg 421 cccgaacagg gacctgaaag cgaaagggaa accagagctc tctcgacgca ggactcggct 481 tgctgaagcg cgcacggcaa gaggcgaggg gcggcgactg gtgagtacgc caaaaatttt 541 gactagcgga ggctagaagg agagagatgg gtgcgagagc gtcagtatta agcgggggag 601 aattagatcg cgatgggaaa aaattcggtt aaggccaggg ggaaagaaaa aatataaatt 661 aaaacatata gtatgggcaa gcagggagct agaacgattc gcagttaatc ctggcctgtt 721 agaaacatca gaaggctgta gacaaatact gggacagcta caaccatccc ttcagacagg 781 atcagaagaa cttagatcat tatataatac agtagcaacc ctctattgtg tgcatcaaag 841 gatagagata aaagacacca aggaagcttt agacaagata gaggaagagc aaaacaaaag 901 taagaccacc gcacagcaag cggccactga tcttcagacc tggaggagga gatatgaggg 961 acaattggag aagtgaatta tataaatata aagtagtaaa aattgaacca ttaggagtag 1021 cacccaccaa ggcaaagaga agagtggtgc agagagaaaa aagagcagtg ggaataggag 1081 ctttgttcct tgggttcttg ggagcagcag gaagcactat gggcgcagcc tcaatgacgc 1141 tgacggtaca ggccagacaa ttattgtctg gtatagtgca gcagcagaac aatttgctga 1201 gggctattga ggcgcaacag catctgttgc aactcacagt ctggggcatc aagcagctcc 1261 aggcaagaat cctggctgtg gaaagatacc taaaggatca acagctcctg gggatttggg 1321 gttgctctgg aaaactcatt tgcaccactg ctgtgccttg gaatgctagt tggagtaata 1381 aatctctgga acagattgga atcacacgac ctggatggag tgggacagag aaattaacaa 1441 ttacacaagc ttaatacact ccttaattga agaatcgcaa aaccagcaag aaaagaatga 1501 acaagaatta ttggaattag ataaatgggc aagtttgtgg aattggttta acataacaaa 1561 ttggctgtgg tatataaaat tattcataat gatagtagga ggcttggtag gtttaagaat 1621 agtttttgct gtactttcta tagtgaatag agttaggcag ggatattcac cattatcgtt 1681 tcagacccac ctcccaaccc cgaggggacc cgacaggccc gaaggaatag aagaagaagg 1741 tggagagaga gacagagaca gatccattcg attagtgaac ggatctcgac ggtatcggtt 1801 aacttttaaa agaaaagggg ggattggggg gtacagtgca ggggaaagaa tagtagacat 1861 aatagcaaca gacatacaaa ctaaagaatt acaaaaacaa attacaaaat tcaaaatttt 1921 atcgatacta gtattatgcc cagtacatga ccttatggga ctttcctact tggcagtaca 1981 tctacgtatt agtcatcgct attaccatgg tgatgcggtt ttggcagtac atcaatgggc 2041 gtggatagcg gtttgactca cggggatttc caagtctcca ccccattgac gtcaatggga 2101 gtttgttttg gcaccaaaat caacgggact ttccaaaatg tcgtaacaac tccgccccat 2161 tgacgcaaat gggcggtagg cgtgtacggt gggaggttta tataagcaga gctcgtttag 2221 tgaaccgtca gatcgcctgg agacgccatc cacgctgttt tgacctccat agaagattct 2281 agagctagcg aattcgccac catgctcagc ctactttgga atacctcccc acagtgcaac 2341 caaatgcaag acgttggtgc cttcaagata gtattctacc tgataggttg gactaatctg 2401 aaggtgccct gggacaacct gctcggtcac acatctgcaa gaactctcca tcttgcactg 2461 aggaccccaa ggagctttta ctgtgagacc atgtcattta gatttggcca acatctcatc 2521 aagccctctg tggtttttct caaaactgaa ctgtccttcg ccctggtgaa taggaaaccc 2581 gttgtacctg gccatgtcct cgtgtgcccg ctgaggccag tagagcgctt ccgtgaccta 2641 catcctgatg aagtggccga tttgtttcaa gtgacccaga gagttgggac agtggtggag 2701 aagcatttcc aggggacctc catcaccttc tccatgcaag atggtcctga agctgggcag 2761 actgtgaagc atgtacatgt ccacgttctt cccaggaagg caggggactt cccccggaat 2821 gacaacatct atgatgagct ccagaaacat gacagagaag aagaggactc gccagccttt 2881 tggagatctg agaaggagat ggctgcagag gcggaggctc tgcgggtcta ctttcaggcc 2941 ggatcctacc catacgacgt acctgattat gcaacttatc cttatgatgt acctgattat 3001 gctagctatc cttatgatgt cccagactac gcataggcgg ccgcgaagga tctgcgatcg 3061 ctccggtgcc cgtcagtggg cagagcgcac atcgcccaca gtccccgaga agttgggggg 3121 aggggtcggc aattgaacgg gtgcctagag aaggtggcgc ggggtaaact gggaaagtga 3181 tgtcgtgtac tggctccgcc tttttcccga gggtggggga gaaccgtata taagtgcagt 3241 agtcgccgtg aacgttcttt ttcgcaacgg gtttgccgcc agaacacagc tgaagcttcg 3301 aggggctcgc atctctcctt cacgcgcccg ccgccctacc tgaggccgcc atccacgccg 3361 gttgagtcgc gttctgccgc ctcccgcctg tggtgcctcc tgaactgcgt ccgccgtcta 3421 ggtaagttta aagctcaggt cgagaccggg cctttgtccg gcgctccctt ggagcctacc 3481 tagactcagc cggctctcca cgctttgcct gaccctgctt gctcaactct acgtctttgt 3541 ttcgttttct gttctgcgcc gttacagatc caagctgtga ccggcgccta cgctagatga 3601 ccgagtacaa gcccacggtg cgcctcgcca cccgcgacga cgtcccccgg gccgtacgca 3661 ccctcgccgc cgcgttcgcc gactaccccg ccacgcgcca caccgtcgac ccggaccgcc 3721 acatcgagcg ggtcaccgag ctgcaagaac tcttcctcac gcgcgtcggg ctcgacatcg 3781 gcaaggtgtg ggtcgcggac gacggcgccg cggtggcggt ctggaccacg ccggagagcg 3841 tcgaagcggg ggcggtgttc gccgagatcg gcccgcgcat ggccgagttg agcggttccc 3901 ggctggccgc gcagcaacag atggaaggcc tcctggcgcc gcaccggccc aaggagcccg 3961 cgtggttcct ggccaccgtc ggcgtctcgc ccgaccacca gggcaagggt ctgggcagcg 4021 ccgtcgtgct ccccggagtg gaggcggccg agcgcgccgg ggtgcccgcc ttcctggaga 4081 cctccgcgcc ccgcaacctc cccttctacg agcggctcgg cttcaccgtc accgccgacg 4141 tcgaggtgcc cgaaggaccg cgcacctggt gcatgacccg caagcccggt gcctgagtcg 4201 acaatcaacc tctggattac aaaatttgtg aaagattgac tggtattctt aactatgttg 4261 ctccttttac gctatgtgga tacgctgctt taatgccttt gtatcatgct attgcttccc 4321 gtatggcttt cattttctcc tccttgtata aatcctggtt gctgtctctt tatgaggagt 4381 tgtggcccgt tgtcaggcaa cgtggcgtgg tgtgcactgt gtttgctgac gcaaccccca 4441 ctggttgggg cattgccacc acctgtcagc tcctttccgg gactttcgct ttccccctcc 4501 ctattgccac ggcggaactc atcgccgcct gccttgcccg ctgctggaca ggggctcggc 4561 tgttgggcac tgacaattcc gtggtgttgt cggggaaatc atcgtccttt ccttggctgc 4621 tcgcctgtgt tgccacctgg attctgcgcg ggacgtcctt ctgctacgtc ccttcggccc 4681 tcaatccagc ggaccttcct tcccgcggcc tgctgccggc tctgcggcct cttccgcgtc 4741 ttcgccttcg ccctcagacg agtcggatct ccctttgggc cgcctccccg cctggtacct 4801 ttaagaccaa tgacttacaa ggcagctgta gatcttagcc actttttaaa agaaaagggg 4861 ggactggaag ggctaattca ctcccaacga aaataagatc tgctttttgc ttgtactggg 4921 tctctctggt tagaccagat ctgagcctgg gagctctctg gctaactagg gaacccactg 4981 cttaagcctc aataaagctt gccttgagtg cttcaagtag tgtgtgcccg tctgttgtgt 5041 gactctggta actagagatc cctcagaccc ttttagtcag tgtggaaaat ctctagcagt 5101 agtagttcat gtcatcttat tattcagtat ttataacttg caaagaaatg aatatcagag 5161 agtgagagga acttgtttat tgcagcttat aatggttaca aataaagcaa tagcatcaca 5221 aatttcacaa ataaagcatt tttttcactg cattctagtt gtggtttgtc caaactcatc 5281 aatgtatctt atcatgtctg gctctagcta tcccgcccct aactccgccc agttccgccc 5341 attctccgcc ccatggctga ctaatttttt ttatttatgc agaggccgag gccgcctcgg 5401 cctctgagct attccagaag tagtgaggag gcttttttgg aggcctagac ttttgcagag 5461 acggcccaaa ttcgtaatca tggtcatagc tgtttcctgt gtgaaattgt tatccgctca 5521 caattccaca caacatacga gccggaagca taaagtgtaa agcctggggt gcctaatgag 5581 tgagctaact cacattaatt gcgttgcgct cactgcccgc tttccagtcg ggaaacctgt 5641 cgtgccagct gcattaatga atcggccaac gcgcggggag aggcggtttg cgtattgggc 5701 gctcttccgc ttcctcgctc actgactcgc tgcgctcggt cgttcggctg cggcgagcgg 5761 tatcagctca ctcaaaggcg gtaatacggt tatccacaga atcaggggat aacgcaggaa 5821 agaacatgtg agcaaaaggc cagcaaaagg ccaggaaccg taaaaaggcc gcgttgctgg 5881 cgtttttcca taggctccgc ccccctgacg agcatcacaa aaatcgacgc tcaagtcaga 5941 ggtggcgaaa cccgacagga ctataaagat accaggcgtt tccccctgga agctccctcg 6001 tgcgctctcc tgttccgacc ctgccgctta ccggatacct gtccgccttt ctcccttcgg 6061 gaagcgtggc gctttctcat agctcacgct gtaggtatct cagttcggtg taggtcgttc 6121 gctccaagct gggctgtgtg cacgaacccc ccgttcagcc cgaccgctgc gccttatccg 6181 gtaactatcg tcttgagtcc aacccggtaa gacacgactt atcgccactg gcagcagcca 6241 ctggtaacag gattagcaga gcgaggtatg taggcggtgc tacagagttc ttgaagtggt 6301 ggcctaacta cggctacact agaaggacag tatttggtat ctgcgctctg ctgaagccag 6361 ttaccttcgg aaaaagagtt ggtagctctt gatccggcaa acaaaccacc gctggtagcg 6421 gtggtttttt tgtttgcaag cagcagatta cgcgcagaaa aaaaggatct caagaagatc 6481 ctttgatctt ttctacgggg tctgacgctc agtggaacga aaactcacgt taagggattt 6541 tggtcatgag attatcaaaa aggatcttca cctagatcct tttaaattaa aaatgaagtt 6601 ttaaatcaat ctaaagtata tatgagtaaa cttggtctga cagttaccaa tgcttaatca 6661 gtgaggcacc tatctcagcg atctgtctat ttcgttcatc catagttgcc tgactccccg 6721 tcgtgtagat aactacgata cgggagggct taccatctgg ccccagtgct gcaatgatac 6781 cgcgagaccc acgctcaccg gctccagatt tatcagcaat aaaccagcca gccggaaggg 6841 ccgagcgcag aagtggtcct gcaactttat ccgcctccat ccagtctatt aattgttgcc 6901 gggaagctag agtaagtagt tcgccagtta atagtttgcg caacgttgtt gccattgcta 6961 caggcatcgt ggtgtcacgc tcgtcgtttg gtatggcttc attcagctcc ggttcccaac 7021 gatcaaggcg agttacatga tcccccatgt tgtgcaaaaa agcggttagc tccttcggtc 7081 ctccgatcgt tgtcagaagt aagttggccg cagtgttatc actcatggtt atggcagcac 7141 tgcataattc tcttactgtc atgccatccg taagatgctt ttctgtgact ggtgagtact 7201 caaccaagtc attctgagaa tagtgtatgc ggcgaccgag ttgctcttgc ccggcgtcaa 7261 tacgggataa taccgcgcca catagcagaa ctttaaaagt gctcatcatt ggaaaacgtt 7321 cttcggggcg aaaactctca aggatcttac cgctgttgag atccagttcg atgtaaccca 7381 ctcgtgcacc caactgatct tcagcatctt ttactttcac cagcgtttct gggtgagcaa 7441 aaacaggaag gcaaaatgcc gcaaaaaagg gaataagggc gacacggaaa tgttgaatac 7501 tcatactctt cctttttcaa tattattgaa gcatttatca gggttattgt ctcatgagcg 7561 gatacatatt tgaatgtatt tagaaaaata aacaaatagg ggttccgcgc acatttcccc 7621 gaaaagtgcc acctgacgtc taagaaacca ttattatcat gacattaacc tataaaaata 7681 ggcgtatcac gaggcccttt cgtctcgcgc gtttcggtga tgacggtgaa aacctctgac 7741 acatgcagct cccggagacg gtcacagctt gtctgtaagc ggatgccggg agcagacaag 7801 cccgtcaggg cgcgtcagcg ggtgttggcg ggtgtcgggg ctggcttaac tatgcggcat 7861 cagagcagat tgtactgaga gtgcaccata tgcggtgtga aataccgcac agatgcgtaa 7921 ggagaaaata ccgcatcagg cgccattcgc cattcaggct gcgcaactgt tgggaagggc 7981 gatcggtgcg ggcctcttcg ctattacgcc agctggcgaa agggggatgt gctgcaaggc 8041 gattaagttg ggtaacgcca gggttttccc agtcacgacg ttgtaaaacg acggccagtg 8101 ccaagctg //