LOCUS V041744 8971 bp DNA circular SYN 01-JAN-1980 DEFINITION synthetic circular DNA. ACCESSION V041744 VERSION V041744 KEYWORDS . SOURCE . ORGANISM . . FEATURES Location/Qualifiers LTR 234..414 /note="truncated 5' long terminal repeat (LTR) from HIV-1" /label="5' LTR (truncated)" misc_feature 458..583 /note="packaging signal of human immunodeficiency virus type 1" /label="HIV-1 Ψ" misc_feature 1076..1309 /note="The Rev response element (RRE) of HIV-1 allows for Rev-dependent mRNA export from the nucleus to the cytoplasm." /label="RRE" CDS 1493..1537 /codon_start=1 /note="recognized by the 2H10 single-chain llama nanobody" /product="antigenic peptide corresponding to amino acids 655 to 669 of the HIV envelope protein gp41 (Lutje Hulsik et al., 2013)" /transl_table=1 /translation="KNEQELLELDKWASL" /label="gp41 peptide" misc_feature 1804..1920 /note="central polypurine tract and central termination sequence of HIV-1" /label="cPPT/CTS" promoter 2010..2213 /note="human cytomegalovirus (CMV) immediate early promoter" /label="CMV promoter" regulatory 2296..2305 /note="vertebrate consensus sequence for strong initiation of translation (Kozak, 1987)" /regulatory_class="other" /label="Kozak sequence" CDS 2737..3537 /label="IL15RA(NM_002189)" /note="IL15RA(NM_002189)" /gene="IL15RA" CDS 3607..3696 /codon_start=1 /product="3 tandem Myc epitope tags" /transl_table=1 /translation="EQKLISEEDLEQKLISEEDLEQKLISEEDL" /label="3xMyc" promoter 3740..3951 /note="core promoter for human elongation factor EF-1α" /label="EF-1α core promoter" LTR 3964..4232 /note="truncated 5' long terminal repeat (LTR) from human T-cell leukemia virus (HTLV) type 1" /label="5' LTR (truncated)" CDS 4265..5059 /codon_start=1 /gene="aph(3')-II (or nptII)" /note="confers resistance to neomycin, kanamycin, and G418 (Geneticin®)" /product="aminoglycoside phosphotransferase from Tn5" /transl_table=1 /translation="MAEQDGLHAGSPAAWVERLFGYDWAQQTIGCSDAAVFRLSAQGRP VLFVKTDLSGALNELQDEAARLSWLATTGVPCAAVLDVVTEAGRDWLLLGEVPGQDLLS SHLAPAEKVSIMADAMRRLHTLDPATCPFDHQAKHRIERARTRMEAGLVDQDDLDEEHQ GLAPAELFARLKARMPDGEDLVVTHGDACLPNIMVENGRFSGFIDCGRLGVADRYQDIA LATRDIAEELGGEWADRFLVLYGIAAPDSQRIAFYRLLDEFF*" /label="NeoR/KanR" misc_feature 5066..5654 /note="woodchuck hepatitis virus posttranscriptional regulatory element" /label="WPRE" LTR 5728..5961 /note="self-inactivating 3' long terminal repeat (LTR) from HIV-1" /label="3' LTR (ΔU3)" polyA_signal 6033..6154 /note="SV40 polyadenylation signal" /label="SV40 poly(A) signal" rep_origin 6173..6308 /note="SV40 origin of replication" /label="SV40 ori" primer_bind complement(6346..6362) /note="common sequencing primer, one of multiple similar variants" /label="M13 rev" protein_bind 6370..6386 /bound_moiety="lac repressor encoded by lacI" /note="The lac repressor binds to the lac operator to inhibit transcription in E. coli. This inhibition can be relieved by adding lactose or isopropyl-β-D-thiogalactopyranoside (IPTG)." /label="lac operator" promoter complement(6394..6424) /note="promoter for the E. coli lac operon" /label="lac promoter" protein_bind 6439..6460 /bound_moiety="E. coli catabolite activator protein" /note="CAP binding activates transcription in the presence of cAMP." /label="CAP binding site" rep_origin complement(6748..7336) /direction=LEFT /note="high-copy-number ColE1/pMB1/pBR322/pUC origin of replication" /label="ori" CDS complement(7507..8367) /codon_start=1 /gene="bla" /note="confers resistance to ampicillin, carbenicillin, and related antibiotics" /product="β-lactamase" /transl_table=1 /translation="MSIQHFRVALIPFFAAFCLPVFA,HPETLVKVKDAEDQLGARVGY IELDLNSGKILESFRPEERFPMMSTFKVLLCGAVLSRIDAGQEQLGRRIHYSQNDLVEY SPVTEKHLTDGMTVRELCSAAITMSDNTAANLLLTTIGGPKELTAFLHNMGDHVTRLDR WEPELNEAIPNDERDTTMPVAMATTLRKLLTGELLTLASRQQLIDWMEADKVAGPLLRS ALPAGWFIADKSGAGERGSRGIIAALGPDGKPSRIVVIYTTGSQATMDERNRQIAEIGA SLIKHW*" /label="AmpR" promoter complement(8368..8472) /gene="bla" /label="AmpR promoter" primer_bind 8946..8962 /note="common sequencing primer, one of multiple similar variants" /label="M13 fwd" ORIGIN 1 acgcgtgtag tcttatgcaa tactcttgta gtcttgcaac atggtaacga tgagttagca 61 acatgcctta caaggagaga aaaagcaccg tgcatgccga ttggtggaag taaggtggta 121 cgatcgtgcc ttattaggaa ggcaacagac gggtctgaca tggattggac gaaccactga 181 attgccgcat tgcagagata ttgtatttaa gtgcctagct cgatacaata aacgggtctc 241 tctggttaga ccagatctga gcctgggagc tctctggcta actagggaac ccactgctta 301 agcctcaata aagcttgcct tgagtgcttc aagtagtgtg tgcccgtctg ttgtgtgact 361 ctggtaacta gagatccctc agaccctttt agtcagtgtg gaaaatctct agcagtggcg 421 cccgaacagg gacctgaaag cgaaagggaa accagagctc tctcgacgca ggactcggct 481 tgctgaagcg cgcacggcaa gaggcgaggg gcggcgactg gtgagtacgc caaaaatttt 541 gactagcgga ggctagaagg agagagatgg gtgcgagagc gtcagtatta agcgggggag 601 aattagatcg cgatgggaaa aaattcggtt aaggccaggg ggaaagaaaa aatataaatt 661 aaaacatata gtatgggcaa gcagggagct agaacgattc gcagttaatc ctggcctgtt 721 agaaacatca gaaggctgta gacaaatact gggacagcta caaccatccc ttcagacagg 781 atcagaagaa cttagatcat tatataatac agtagcaacc ctctattgtg tgcatcaaag 841 gatagagata aaagacacca aggaagcttt agacaagata gaggaagagc aaaacaaaag 901 taagaccacc gcacagcaag cggccactga tcttcagacc tggaggagga gatatgaggg 961 acaattggag aagtgaatta tataaatata aagtagtaaa aattgaacca ttaggagtag 1021 cacccaccaa ggcaaagaga agagtggtgc agagagaaaa aagagcagtg ggaataggag 1081 ctttgttcct tgggttcttg ggagcagcag gaagcactat gggcgcagcc tcaatgacgc 1141 tgacggtaca ggccagacaa ttattgtctg gtatagtgca gcagcagaac aatttgctga 1201 gggctattga ggcgcaacag catctgttgc aactcacagt ctggggcatc aagcagctcc 1261 aggcaagaat cctggctgtg gaaagatacc taaaggatca acagctcctg gggatttggg 1321 gttgctctgg aaaactcatt tgcaccactg ctgtgccttg gaatgctagt tggagtaata 1381 aatctctgga acagattgga atcacacgac ctggatggag tgggacagag aaattaacaa 1441 ttacacaagc ttaatacact ccttaattga agaatcgcaa aaccagcaag aaaagaatga 1501 acaagaatta ttggaattag ataaatgggc aagtttgtgg aattggttta acataacaaa 1561 ttggctgtgg tatataaaat tattcataat gatagtagga ggcttggtag gtttaagaat 1621 agtttttgct gtactttcta tagtgaatag agttaggcag ggatattcac cattatcgtt 1681 tcagacccac ctcccaaccc cgaggggacc cgacaggccc gaaggaatag aagaagaagg 1741 tggagagaga gacagagaca gatccattcg attagtgaac ggatctcgac ggtatcggtt 1801 aacttttaaa agaaaagggg ggattggggg gtacagtgca ggggaaagaa tagtagacat 1861 aatagcaaca gacatacaaa ctaaagaatt acaaaaacaa attacaaaat tcaaaatttt 1921 atcgatacta gtattatgcc cagtacatga ccttatggga ctttcctact tggcagtaca 1981 tctacgtatt agtcatcgct attaccatgg tgatgcggtt ttggcagtac atcaatgggc 2041 gtggatagcg gtttgactca cggggatttc caagtctcca ccccattgac gtcaatggga 2101 gtttgttttg gcaccaaaat caacgggact ttccaaaatg tcgtaacaac tccgccccat 2161 tgacgcaaat gggcggtagg cgtgtacggt gggaggttta tataagcaga gctcgtttag 2221 tgaaccgtca gatcgcctgg agacgccatc cacgctgttt tgacctccat agaagattct 2281 agagctagcg aattcgccac catggtattg ggaaccatag atttgtgcag ctgtttcagt 2341 gcagggcttc ctaaaacaga agccaactgg gtgaatgtaa taagtgattt gaaaaaaatt 2401 gaagatctta ttcaatctat gcatattgat gctactttat atacggaaag tgatgttcac 2461 cccagttgca aagtaacagc aatgaagtgc tttctcttgg agttacaagt tatttcactt 2521 gagtccggag atgcaagtat tcatgataca gtagaaaatc tgatcatcct agcaaacaac 2581 agtttgtctt ctaatgggaa tgtaacagaa tctggatgca aagaatgtga ggaactggag 2641 gaaaaaaata ttaaagaatt tttgcagagt tttgtacata ttgtccaaat gttcatcaac 2701 acttctagca gcagcagcgg tagcagcagc agcggcatgg ccccgcggcg ggcgcgcggc 2761 tgccggaccc tcggtctccc ggcgctgcta ctgctgctgc tgctccggcc gccggcgacg 2821 cggggcatca cgtgccctcc ccccatgtcc gtggaacacg cagacatctg ggtcaagagc 2881 tacagcttgt actccaggga gcggtacatt tgtaactctg gtttcaagcg taaagccggc 2941 acgtccagcc tgacggagtg cgtgttgaac aaggccacga atgtcgccca ctggacaacc 3001 cccagtctca aatgcattag agaccctgcc ctggttcacc aaaggccagc gccaccctcc 3061 acagtaacga cggcaggggt gaccccacag ccagagagcc tctccccttc tggaaaagag 3121 cccgcagctt catctcccag ctcaaacaac acagcggcca caacagcagc tattgtcccg 3181 ggctcccagc tgatgccttc aaaatcacct tccacaggaa ccacagagat aagcagtcat 3241 gagtcctccc acggcacccc ctctcagaca acagccaaga actgggaact cacagcatcc 3301 gcctcccacc agccgccagg tgtgtatcca cagggccaca gcgacaccac tgtggctatc 3361 tccacgtcca ctgtcctgct gtgtgggctg agcgctgtgt ctctcctggc atgctacctc 3421 aagtcaaggc aaactccccc gctggccagc gttgaaatgg aagccatgga ggctctgccg 3481 gtgacttggg ggaccagcag cagagatgaa gacttggaaa actgctctca ccacctagtg 3541 gtgatctcag ccatcctggc cctggtggtg ctcaccatca tctcccttat catcctcatc 3601 ggatccgaac aaaaactaat atcagaggaa gatttggaac agaaactaat cagtgaagaa 3661 gatttagagc aaaagttaat ttccgaggag gacttatagc ggccgcgaag gatctgcgat 3721 cgctccggtg cccgtcagtg ggcagagcgc acatcgccca cagtccccga gaagttgggg 3781 ggaggggtcg gcaattgaac gggtgcctag agaaggtggc gcggggtaaa ctgggaaagt 3841 gatgtcgtgt actggctccg cctttttccc gagggtgggg gagaaccgta tataagtgca 3901 gtagtcgccg tgaacgttct ttttcgcaac gggtttgccg ccagaacaca gctgaagctt 3961 cgaggggctc gcatctctcc ttcacgcgcc cgccgcccta cctgaggccg ccatccacgc 4021 cggttgagtc gcgttctgcc gcctcccgcc tgtggtgcct cctgaactgc gtccgccgtc 4081 taggtaagtt taaagctcag gtcgagaccg ggcctttgtc cggcgctccc ttggagccta 4141 cctagactca gccggctctc cacgctttgc ctgaccctgc ttgctcaact ctacgtcttt 4201 gtttcgtttt ctgttctgcg ccgttacaga tccaagctgt gaccggcgcc tacgctaggc 4261 caccatggct gaacaagatg gattgcacgc aggttctccg gccgcttggg tggagaggct 4321 attcggctat gactgggcac aacagacaat cggctgctct gatgccgccg tgttccggct 4381 gtcagcgcag gggcgcccgg ttctttttgt caagaccgac ctgtccggtg ccctgaatga 4441 actgcaggac gaggcagcgc ggctatcgtg gctggccacg acgggcgttc cttgcgcagc 4501 tgtgctcgac gttgtcactg aagcgggaag ggactggctg ctattgggcg aagtgccggg 4561 gcaggatctc ctgtcatctc accttgctcc tgccgagaaa gtatccatca tggctgatgc 4621 aatgcggcgg ctgcatacgc ttgatccggc tacctgccca ttcgaccacc aagcgaaaca 4681 tcgcatcgag cgagcacgta ctcggatgga agccggtctt gtcgatcagg atgatctgga 4741 cgaagagcat caggggctcg cgccagccga actgttcgcc aggctcaagg cgcgcatgcc 4801 cgacggcgag gatctcgtcg tgacccatgg cgatgcctgc ttgccgaata tcatggtgga 4861 aaatggccgc ttttctggat tcatcgactg tggccggctg ggtgtggcgg accgctatca 4921 ggacatagcg ttggctaccc gtgatattgc tgaagagctt ggcggcgaat gggctgaccg 4981 cttcctcgtg ctttacggta tcgccgctcc cgattcgcag cgcatcgcct tctatcgcct 5041 tcttgacgag ttcttctgag tcgacaatca acctctggat tacaaaattt gtgaaagatt 5101 gactggtatt cttaactatg ttgctccttt tacgctatgt ggatacgctg ctttaatgcc 5161 tttgtatcat gctattgctt cccgtatggc tttcattttc tcctccttgt ataaatcctg 5221 gttgctgtct ctttatgagg agttgtggcc cgttgtcagg caacgtggcg tggtgtgcac 5281 tgtgtttgct gacgcaaccc ccactggttg gggcattgcc accacctgtc agctcctttc 5341 cgggactttc gctttccccc tccctattgc cacggcggaa ctcatcgccg cctgccttgc 5401 ccgctgctgg acaggggctc ggctgttggg cactgacaat tccgtggtgt tgtcggggaa 5461 atcatcgtcc tttccttggc tgctcgcctg tgttgccacc tggattctgc gcgggacgtc 5521 cttctgctac gtcccttcgg ccctcaatcc agcggacctt ccttcccgcg gcctgctgcc 5581 ggctctgcgg cctcttccgc gtcttcgcct tcgccctcag acgagtcgga tctccctttg 5641 ggccgcctcc ccgcctggta cctttaagac caatgactta caaggcagct gtagatctta 5701 gccacttttt aaaagaaaag gggggactgg aagggctaat tcactcccaa cgaaaataag 5761 atctgctttt tgcttgtact gggtctctct ggttagacca gatctgagcc tgggagctct 5821 ctggctaact agggaaccca ctgcttaagc ctcaataaag cttgccttga gtgcttcaag 5881 tagtgtgtgc ccgtctgttg tgtgactctg gtaactagag atccctcaga cccttttagt 5941 cagtgtggaa aatctctagc agtagtagtt catgtcatct tattattcag tatttataac 6001 ttgcaaagaa atgaatatca gagagtgaga ggaacttgtt tattgcagct tataatggtt 6061 acaaataaag caatagcatc acaaatttca caaataaagc atttttttca ctgcattcta 6121 gttgtggttt gtccaaactc atcaatgtat cttatcatgt ctggctctag ctatcccgcc 6181 cctaactccg cccagttccg cccattctcc gccccatggc tgactaattt tttttattta 6241 tgcagaggcc gaggccgcct cggcctctga gctattccag aagtagtgag gaggcttttt 6301 tggaggccta gacttttgca gagacggccc aaattcgtaa tcatggtcat agctgtttcc 6361 tgtgtgaaat tgttatccgc tcacaattcc acacaacata cgagccggaa gcataaagtg 6421 taaagcctgg ggtgcctaat gagtgagcta actcacatta attgcgttgc gctcactgcc 6481 cgctttccag tcgggaaacc tgtcgtgcca gctgcattaa tgaatcggcc aacgcgcggg 6541 gagaggcggt ttgcgtattg ggcgctcttc cgcttcctcg ctcactgact cgctgcgctc 6601 ggtcgttcgg ctgcggcgag cggtatcagc tcactcaaag gcggtaatac ggttatccac 6661 agaatcaggg gataacgcag gaaagaacat gtgagcaaaa ggccagcaaa aggccaggaa 6721 ccgtaaaaag gccgcgttgc tggcgttttt ccataggctc cgcccccctg acgagcatca 6781 caaaaatcga cgctcaagtc agaggtggcg aaacccgaca ggactataaa gataccaggc 6841 gtttccccct ggaagctccc tcgtgcgctc tcctgttccg accctgccgc ttaccggata 6901 cctgtccgcc tttctccctt cgggaagcgt ggcgctttct catagctcac gctgtaggta 6961 tctcagttcg gtgtaggtcg ttcgctccaa gctgggctgt gtgcacgaac cccccgttca 7021 gcccgaccgc tgcgccttat ccggtaacta tcgtcttgag tccaacccgg taagacacga 7081 cttatcgcca ctggcagcag ccactggtaa caggattagc agagcgaggt atgtaggcgg 7141 tgctacagag ttcttgaagt ggtggcctaa ctacggctac actagaagga cagtatttgg 7201 tatctgcgct ctgctgaagc cagttacctt cggaaaaaga gttggtagct cttgatccgg 7261 caaacaaacc accgctggta gcggtggttt ttttgtttgc aagcagcaga ttacgcgcag 7321 aaaaaaagga tctcaagaag atcctttgat cttttctacg gggtctgacg ctcagtggaa 7381 cgaaaactca cgttaaggga ttttggtcat gagattatca aaaaggatct tcacctagat 7441 ccttttaaat taaaaatgaa gttttaaatc aatctaaagt atatatgagt aaacttggtc 7501 tgacagttac caatgcttaa tcagtgaggc acctatctca gcgatctgtc tatttcgttc 7561 atccatagtt gcctgactcc ccgtcgtgta gataactacg atacgggagg gcttaccatc 7621 tggccccagt gctgcaatga taccgcgaga cccacgctca ccggctccag atttatcagc 7681 aataaaccag ccagccggaa gggccgagcg cagaagtggt cctgcaactt tatccgcctc 7741 catccagtct attaattgtt gccgggaagc tagagtaagt agttcgccag ttaatagttt 7801 gcgcaacgtt gttgccattg ctacaggcat cgtggtgtca cgctcgtcgt ttggtatggc 7861 ttcattcagc tccggttccc aacgatcaag gcgagttaca tgatccccca tgttgtgcaa 7921 aaaagcggtt agctccttcg gtcctccgat cgttgtcaga agtaagttgg ccgcagtgtt 7981 atcactcatg gttatggcag cactgcataa ttctcttact gtcatgccat ccgtaagatg 8041 cttttctgtg actggtgagt actcaaccaa gtcattctga gaatagtgta tgcggcgacc 8101 gagttgctct tgcccggcgt caatacggga taataccgcg ccacatagca gaactttaaa 8161 agtgctcatc attggaaaac gttcttcggg gcgaaaactc tcaaggatct taccgctgtt 8221 gagatccagt tcgatgtaac ccactcgtgc acccaactga tcttcagcat cttttacttt 8281 caccagcgtt tctgggtgag caaaaacagg aaggcaaaat gccgcaaaaa agggaataag 8341 ggcgacacgg aaatgttgaa tactcatact cttccttttt caatattatt gaagcattta 8401 tcagggttat tgtctcatga gcggatacat atttgaatgt atttagaaaa ataaacaaat 8461 aggggttccg cgcacatttc cccgaaaagt gccacctgac gtctaagaaa ccattattat 8521 catgacatta acctataaaa ataggcgtat cacgaggccc tttcgtctcg cgcgtttcgg 8581 tgatgacggt gaaaacctct gacacatgca gctcccggag acggtcacag cttgtctgta 8641 agcggatgcc gggagcagac aagcccgtca gggcgcgtca gcgggtgttg gcgggtgtcg 8701 gggctggctt aactatgcgg catcagagca gattgtactg agagtgcacc atatgcggtg 8761 tgaaataccg cacagatgcg taaggagaaa ataccgcatc aggcgccatt cgccattcag 8821 gctgcgcaac tgttgggaag ggcgatcggt gcgggcctct tcgctattac gccagctggc 8881 gaaaggggga tgtgctgcaa ggcgattaag ttgggtaacg ccagggtttt cccagtcacg 8941 acgttgtaaa acgacggcca gtgccaagct g //